Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01024 ATGACCGTGACAGTTAGCATCACCACCCCAGCCGCGGGGAAGCCAAGATCAACACACCCATCAAAATTTCTACAGAACTTATGGACGCGGACTAACCAAGGCTTGGCCGGAACCCACGATTCATGGGGACCCCAAATCCAAGGCTTTATAGGGACAGATTTTCCCAACGAAGACGGCGACAGGGACGTCGTCGGTGACCGAAATGCCACCGGTGTCGGCGAGGAAGTTACCTCCGAGAATGGCGGTGGGATCGAGGTTTGTGCATTTGATAATCGGGGAATGGGTCGGAGCTCCGTCCCCACAAAAAAATCTGCATATACAACAAAGATAATGGCGAAGGATGCCATTGCCTTATTGGATCATTTGGGGTGGGAAAAAGCTCATATTCTTGGTCATTCCATGGGAGGTATGATAGCTTGCAAATTAGCGGCTATGGCGCCAGGAAGATTCAAGTCATTGGCCATGCTCAATGTAACTGGTGGAGGTTTTCAATGTTGCCCTAAGCTTGACCCGCAAACATTCAAAATTGCAGTGAGATTCTTAAAGGCCAAGACTCCTGAACGAAGGACTAGTGTTGATTTGGATATCCACTATTCGAAGGAGTATCTTGAGGAGTATGTTGGATTTGAAAAAAGAAGAGCAGTATTATATCAGGAATATGTTAAAGGTATATCAGCAACAGGAATGCAGTCTAATGCTGGTTTTGCTGGTCAAGTTAATGCATGTTGGACGCATAAAGTGACAAAAAAAGAGATAGAATGCCTTAAGTCTGCTGGATTTCTTGTATCAGTCATTCATGGCAGGCATGATGTTATTGCTCAGATGTACTATGCTAGAAGACTTGCCGAAAAGCTGTATCCTGTTGCTAGAATGGTAGACCTCCATGGAGGTCATCTAGTCTGTCGTGAAAAAACCGAAGAGGTAAATCGAGCTCTTCTCGACTTAATTAGAGCCTCGGAAATGAAGACGAGTCCACACGAGTGGACAAACTTGGCAAAGAAAAGATCATGGTGGATGGAGGAGAGAATGGCTTTTGTAACACTGAAGAATGAAGGAGGAGGAAGCAGTATCTCCTCCTCCTCCTCCTCCTCCTCCGCCTCCTCCTCCGCCAAACCTTTCTTCTTAGAGAGACTCCATCTTTTCGTGTTGTATCTCTTTGGTCTGATTCTTTTTGAGTTCGAGTATCTCCGGAACGGCCTGAAAAGCTTGAAACCGAACCAGACCTCCGCAGAGCGAAGCGAGGAGGTGGAGGAAGAACGCCAAGAAGACTCGTTTCGCTGTAATCCGCAGCGGCTGCTCGTCAAATTCTTCTGTTTTTCATTCATTTCAAACCTCAATTTCTCAATTCTGCACTCATTTCAGCAGCTCGCCATGTTTCACTCAAACAATATGCAGCTGGCTATTCGCATACCGACATCGCCGGCCCAAGATTCTACGCAGTATATGCAAGTCGATCAGAGCGACAGTTCGTGTGTCGTGAGGAATGATATGCAAAATGGGGGCTTTGCTCATGCGGAATACATCTTCAATTTTTCCAAGAAACTTCAAGAGGATCTACAGACGTTCGGAATGAAAATAAAGCAACACGAGGACAACATTAAATTTCTCAAGACTCAGAAAAGCAAATTAGATGAATCCATCCTCGATTTGCAAGTTATTCTAGGCAAGTATCATCATTCTTCAGGCACGCCTGTGGCTGAAAACGAGATTCATTCCCATCCTCAAAGTGATGAGGAAACGATGCAACAGATTATGCAGCAGGAGAAGTCTGCTGCTGGAATTATTTGTAAATTGAGCGCACATCATAGTATTCAGGCTTACAATATCATGTTGACCAAAGATGTATTGGGCATTGTTGCTCGGCTTGGAAAAGTTGATGATGATAATCTTAGCAGACTTCTCTCTGAGTACTTGGGAATGGAAACCATGCTGGCAATTGTCTGTAGAACTTACGAGGGAGTTAAGGCATTAGAAATATATGACAAGGAAGGTTGCATAAACAAAAGTTTTGGAATTCATGGTCTTGGTGCTTCAATTGGGAGGAACTTGGATGGCCGGTTTCTCGTAATTTGTCTTGAACATTTGAGACCATACGTTGGCGATTTTATTGCTAATGACCCACAAAGGAGGCTTGACCTTATAAAGCCAAGATTACCTAATGGGGAGTGTCCACCCGGCTTTCTTGGCTTTGCTGTTAATATGATTGATATTGATAGCATGCACATATTTTGTCTCGCAGCCAATGGATATGGTCTCAGGGAGACCCTGTTCTATTCTCTCTTTTCTCGTCTTCAAGTATATAAAACCAGAGCAGACATGCTACAAGCTCTCCCTTGCATTAGTGATGGTGCACTTTCTTTAGATGGAGGGATAATTAAGGCTACTGGTGTTTTTTGCTTGGGCAACCAGGAAGATGTTCAGTTGAGATTCCCAAAGGCCTCAATGAAATCAAGCCTTCCTGAAAACTACATTGAATCTGCGAGGCAGATTAAAGAGCTCAAGTGGAAAAAGGAAAAGATGATTGAAGATATAAAGAGAGAACATGCGTTGTTGGACAATTCTAAGCTCAATTTTGACAGGAAAAAGGCAGAGTTTCTGAAGTTCCTGGCTGAAAGCTCATCATACGCAGCTCAGCAACAACTCTCAGCCAAGCCGGAGAGGTTGACGCCACGCTGCAATATTAACTCTGGGAAAATGCATAAGCTTCATATTGCATTTTCAGGTAAATATCTTATGGCATTCTTTAGTGCTTGCTGTCTAAATTTATTGAAACTAGTGTTCCTAACAGCAGAGACAACGGAGTTCTCTTGCCCTGCAGTGGATTTAGATGGGATGGCGTGTTCATATGATTTGTCCTTGGTGAATTTTGAACATATTGTCTTCTTTTGCACAACGGCTGCAATTGAGATATTCTCAGTAGATAATGGGCGCAGAGAAAGAGGCAGAATCAAGCGGTTGGTTGTAATCCAGTATGTTTGGTGTGATGCAATCTGTGTGATGCAATCAGTTGACGAGGACAGTAAGCAACAGAGTTTGAAGCGTTCAAGGCCTCTTTCGTACAACATGACCGTCACGAACTCAAGTGTTGCTCAGAGTTTGGATGATTCTTTCCTTTTCCCAGTTGAAGAGATTGTACAATATCCATTGCCGGGATATGTTGCGCCCACTTCAATAACGTTCAGTCCAGACGATAGTTTCGTTACTTACTTGTTTAGTCCTGATTGTACCTTAAATAAGAAGGTTTTTGCTTTCGATATCACAACTGGCAAACAGGAGTTGATTTTCAGTCCTCCTGATGGTGGGCTGGACGAGTGTAATATTTCACCGGAAGAGAAACTGAGGAGAGAAAGATTAAGGGAACGCGGTTTGGGAGTGACTCGGTATGAATGGGTGAAATCAAGCACCAAAAGGAAAGCGATTATGGTGCCTCTGCCTGCTGGGATTTATATTCAGGACTTTCTTGGCTCAACGCCCGAGCTTAAGCTTTCCAGTAAACCCTCTTCGCCGATCATGGATCCACATCTCTCACCAGACGGGACCATGCTTGCGTTTGTTAATGATGGGGATCTTCATGTCATGAATCTATCATACAACGAAATGAGACAGTTGACTGTTGGTGCTAACCGAAACATTTTGCATGGAATTGCGGAGTATATAGCTGAGGAGGAAATGGATCGAAAAAACGGGTACTGGTGGTCACCAGACAGCAAATATATTGCATTTACACAAGTTGATACTTCAAAGATCCCTGCATTTAGAATCATGCATCAAGGTAAGAGTTCGGTTGGTTCGGATGCACAAGAAGACCATGCTTATTCATTCGCTGGAACTTCCAATGCCATTGTTCGTCTCGGTGTCGTCTCTGTTGCTGGAGGCTCAATTACTTGGATGGATCTTCTTTGTGGAGAAACGGCTGAAGAGGAATATCTGGCTCGAGTCTGTTGGATGCACGAGAATATTCTCATCGCTCAGGTTCTGAATAGGTTACATACGAAGCTGAAAATTCTCAGGTTCGATATCAAGACAGGAGAGAGAAAAGTTTTGCTAGTAGAAGAACAAGATTCATGGGTTAACCTACATGATTGTTTCACTCCACTAGACAAAAGTATCAGCAAATATTCTGGGGGATTCATATGGGCAAGTGAAAAAACTGGATTTAGACATCTTTATCTACACGATGGCCATGGGACGTGCTTGGGACCGATCACTGAAGGTGACTGGATGGTCGAACAAATTGCCGGTGTAAACGAGGCAACCGGGCTAGTTTATTTTACTGGAACTCTTGATGGTCCTCTTGAATCTCATCTTTACTGTACCAAACTAACTACTGCAGGGAATGCCCCCTTGGAGCCACCAATAAGACTGACTCATGGCAAGGGGAAACATGTCGTCGTACTCGATCATCGGATGAGAAGTTTTATCGACATTCACGATTCCCTCGATTCTCCCCCGAGGGTGTTGCTCTGTTCCTTGAAAGATGGAAGTGCCATTTTGCCAGTTTATGAGCAAACACTTGCAATTCCAAGGATTGAAAGGCTTCATCTAGAGCCTCCAGAGATCGTTGAGATACAGGCCGGTGACGGGACATTGCTCTATGGGGCTTTATACAAGCCTAACGAGACGATATTTGGACCTCCGCCCTACAAAACTATGATCATTGTGTATGGTGGTCCAAGTGTGCAGCTAGTTTTCAATTCGTGGATCAATACAGTCGACATGAGAGCTCAGTACCTACGTAGCAGAGGAATCTTAGTGTGGAAGTTAGACAACAGAGGAACGAGTCGCCGCGGACTCAAGTTCGAAGCTTCTCTGAAATACAATATTGGCCATATCGATGCAGACGATCAAGTGGTTGGAGCAAAATGGCTGATCAGACAGGGTCTAGCAAGAGCTGGAGAGATGGGTTTATATGGATGGAGCTATGGTGGCTTTCTGTCAGTAATGAGCTTGGCCCGGTTTCCAGATATCTTTCGATGTGCGATATCCGGTGCCCCTGTTACATCATGGGACGGGTACGACACGTTTTACACAGAAAAGTACATGGGATTACCATGTCGGGACCCAGAAGTTTACGAGAAAAGCTCGGTGATGCATCATATAGACAAGATGACAGGGAAGCTGCTGCTTGTACACGGTATGATTGATGAGAATGTACACTTCAGGCATACAGCAAGGCTTGTGAATGCACTCATATCGGCTGGAAAGACGTATGAGCTGCTGATATTCCCGGATGAACGACATATGCCTCGACAGCATCGAGATCGGATCTACATGGAAGAAAGAATCTGGGAATTCATTCAGAGGAACTTGTGA 5313 44.4 MTVTVSITTPAAGKPRSTHPSKFLQNLWTRTNQGLAGTHDSWGPQIQGFIGTDFPNEDGDRDVVGDRNATGVGEEVTSENGGGIEVCAFDNRGMGRSSVPTKKSAYTTKIMAKDAIALLDHLGWEKAHILGHSMGGMIACKLAAMAPGRFKSLAMLNVTGGGFQCCPKLDPQTFKIAVRFLKAKTPERRTSVDLDIHYSKEYLEEYVGFEKRRAVLYQEYVKGISATGMQSNAGFAGQVNACWTHKVTKKEIECLKSAGFLVSVIHGRHDVIAQMYYARRLAEKLYPVARMVDLHGGHLVCREKTEEVNRALLDLIRASEMKTSPHEWTNLAKKRSWWMEERMAFVTLKNEGGGSSISSSSSSSSASSSAKPFFLERLHLFVLYLFGLILFEFEYLRNGLKSLKPNQTSAERSEEVEEERQEDSFRCNPQRLLVKFFCFSFISNLNFSILHSFQQLAMFHSNNMQLAIRIPTSPAQDSTQYMQVDQSDSSCVVRNDMQNGGFAHAEYIFNFSKKLQEDLQTFGMKIKQHEDNIKFLKTQKSKLDESILDLQVILGKYHHSSGTPVAENEIHSHPQSDEETMQQIMQQEKSAAGIICKLSAHHSIQAYNIMLTKDVLGIVARLGKVDDDNLSRLLSEYLGMETMLAIVCRTYEGVKALEIYDKEGCINKSFGIHGLGASIGRNLDGRFLVICLEHLRPYVGDFIANDPQRRLDLIKPRLPNGECPPGFLGFAVNMIDIDSMHIFCLAANGYGLRETLFYSLFSRLQVYKTRADMLQALPCISDGALSLDGGIIKATGVFCLGNQEDVQLRFPKASMKSSLPENYIESARQIKELKWKKEKMIEDIKREHALLDNSKLNFDRKKAEFLKFLAESSSYAAQQQLSAKPERLTPRCNINSGKMHKLHIAFSGKYLMAFFSACCLNLLKLVFLTAETTEFSCPAVDLDGMACSYDLSLVNFEHIVFFCTTAAIEIFSVDNGRRERGRIKRLVVIQYVWCDAICVMQSVDEDSKQQSLKRSRPLSYNMTVTNSSVAQSLDDSFLFPVEEIVQYPLPGYVAPTSITFSPDDSFVTYLFSPDCTLNKKVFAFDITTGKQELIFSPPDGGLDECNISPEEKLRRERLRERGLGVTRYEWVKSSTKRKAIMVPLPAGIYIQDFLGSTPELKLSSKPSSPIMDPHLSPDGTMLAFVNDGDLHVMNLSYNEMRQLTVGANRNILHGIAEYIAEEEMDRKNGYWWSPDSKYIAFTQVDTSKIPAFRIMHQGKSSVGSDAQEDHAYSFAGTSNAIVRLGVVSVAGGSITWMDLLCGETAEEEYLARVCWMHENILIAQVLNRLHTKLKILRFDIKTGERKVLLVEEQDSWVNLHDCFTPLDKSISKYSGGFIWASEKTGFRHLYLHDGHGTCLGPITEGDWMVEQIAGVNEATGLVYFTGTLDGPLESHLYCTKLTTAGNAPLEPPIRLTHGKGKHVVVLDHRMRSFIDIHDSLDSPPRVLLCSLKDGSAILPVYEQTLAIPRIERLHLEPPEIVEIQAGDGTLLYGALYKPNETIFGPPPYKTMIIVYGGPSVQLVFNSWINTVDMRAQYLRSRGILVWKLDNRGTSRRGLKFEASLKYNIGHIDADDQVVGAKWLIRQGLARAGEMGLYGWSYGGFLSVMSLARFPDIFRCAISGAPVTSWDGYDTFYTEKYMGLPCRDPEVYEKSSVMHHIDKMTGKLLLVHGMIDENVHFRHTARLVNALISAGKTYELLIFPDERHMPRQHRDRIYMEERIWEFIQRNL 1770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6333216 6358060 + CmaCh15G010240.1 Cma15g01024 310174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01024 1770 PANTHER DIPEPTIDYL-PEPTIDASE 4-RELATED 1038 1762 - -
Cma15g01024 1770 Gene3D - 1041 1510 - -
Cma15g01024 1770 Gene3D alpha/beta hydrolase 33 318 IPR029058 -
Cma15g01024 1770 SUPERFAMILY alpha/beta-Hydrolases 1517 1770 IPR029058 -
Cma15g01024 1770 Pfam Dipeptidyl peptidase IV (DPP IV) N-terminal region 1142 1484 IPR002469 GO:0006508
Cma15g01024 1770 SUPERFAMILY DPP6 N-terminal domain-like 1052 1500 - -
Cma15g01024 1770 Pfam Prolyl oligopeptidase family 1571 1770 IPR001375 GO:0006508|GO:0008236
Cma15g01024 1770 Coils Coil 512 546 - -
Cma15g01024 1770 Pfam alpha/beta hydrolase fold 83 158 IPR000073 -
Cma15g01024 1770 MobiDBLite consensus disorder prediction 53 78 - -
Cma15g01024 1770 Gene3D alpha/beta hydrolase 1513 1769 IPR029058 -
Cma15g01024 1770 MobiDBLite consensus disorder prediction 1 21 - -
Cma15g01024 1770 SUPERFAMILY alpha/beta-Hydrolases 82 316 IPR029058 -
Cma15g01024 1770 PANTHER PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED 1038 1762 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01024 K01278 DPP4, CD26; dipeptidyl-peptidase 4 [EC:3.4.14.5] - csv:101223131 1458.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01122 Cma15g01024 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01122 Cma-Chr2:6657999 Cma15g01024 Cma-Chr15:6333216 0 dispersed
Cma09g00211 Cma-Chr9:883504 Cma15g01024 Cma-Chr15:6333216 9.54E-09 dispersed
Cma15g01024 Cma-Chr15:6333216 Cma14g00910 Cma-Chr14:4715823 4.58E-09 dispersed
Cma15g01024 Cma-Chr15:6333216 Cma16g00044 Cma-Chr16:192514 9.87E-131 wgd
Cma15g01024 Cma-Chr15:6333216 Cma02g01118 Cma-Chr2:6638024 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1029 . Blo15g00085 . . . Bpe07g01018 . . . . Cma02g01122 Cma15g01024 Car02g00931 Car15g00957 . Cpe05g00597 . . . . . . . . Cla01g00038 Cam01g0037 Cec01g0036 Cco01g0038 Clacu01g0039 Cmu01g0037 Cre09g2470 Cone1ag0993 . Cone14ag0005 Cone15ag0008 . Csa05g00046 Chy09g01442 . . . Bda06g00788 . . . . Bma12g01206 . Cmo02g01150 Cmo15g01087 . . . . . Cpe13g00318 Bhi12g00645 . . Lac11g0162 . . Lcy12g0138 . . . . . . . Lsi09g00018 . . Cme09g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002992 2 7 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 11 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01024 Cma_Chr15 FPKM 13.329047 14.802948 13.199145 14.302294 14.401777 14.524265 13.808427 16.895569 15.69345 15.975924