Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01025 ATGAACAACAACTACAATAAGCTCCACTCCTCCCGCTCCGGCGACACTCCGGTCACCAGCTTTCGTGTTTCCAATGATCATTCTAATCCCCCGCCGCCACCTCCACCATCCTCCTCCCACCGCCGTATCCTCCTCATCTCCTTCTTCTCCATCCTTCTCATCACTGCCTCCACCGTCTCGGCAGTCGTTCTCGTCCACTCTCGCATCACCACCTCCACCGAGTCGCATTTCCCCCACAACAAGCCCACACAAGCCATCTCCCGGGCTTGCAGCCTCACTCTCTACCCTTCTCTTTGCATCTCCTCCCTTCTCTCCGCCCCCGGTTCTCTCTCCGCCGACGTCCACGACCTCGTCCATATCTCTCTCAACCTAACTCTCCAACATCTCACCAAAGCTCTCTATTCCACTTCACAAATCCCCATCTCCCAAATCTCCAACGACCCTCTTGCCCAATCCGCTTATGAAGACTGTATGGAGCTTCTAAACGACGCCGTTGAAGCTTTTTCCCTCTCTCTCTTCTCCACAACCGCCACCAACCACGACGTGATGACGTGGCTGAGTGCAGCGTTGACTTACCATGACACGTGTACGGATGGATTTTCGGATGTGGCTGACCCAGTCAAGGATCAGATAACGGCCAAATTGAGTGATTTGTCGGAGATGATAAGCAACTCTTTAGCCATTTTTTCTGGGTTTGGTGGTGGGGATTTGCCGGTGGAGAACCGCCGCCGCCGCCGGCTGATGGAGAGTGATGAACAGTGGTTAGCCGAGGAGAATAATGGTGATGGGGATTTTCCCCGGTGGGTGAGTGGGAAAGATCGCCGCCTTTTGGCTGCTCCCATATCTTCAATTCAGGCGGATATTGTGGTGGCTAAGGATGGTAGTGGCAAATTCAAGACAGTGGCGGAGGCCATTGCGGCGGCTCCGTCGTCCAGTAGCCGCCGGATCGTGATCTACATTAAAGCCGGAAAGTATGAAGAGGAGAATTTGAAGGTAGGAAGGAAGAAAACAAACTTGATGTTTGTAGGAGATGGGAAGGGTATAACCGTCATTTCAGGTGGTAAAAGCGTTTATGACAAAGTTACCACTTTCCGGACCGCCACCTTTGCCGGTTCTGGGACAGGACTAATTCTACGAGACATGACATTTGAGAACACGGCAGGGCCAAACAAGCACCAAGCAGTGGCATTGCGCTTGAGTGCAGACCACACTGTGGTATTTCGTTCCAACGTTATCGGTTATCAAGACACTCTCTATGTCCACTCGAATCGTCAATTCTTTCGAGAGTGCGACATTTACGGCACGATTGATTTCATCTTTGGTAATGCTGCCGTCGTCTTCCAAAGTTGCAACATCTATGCCCGTAAGCCAATGTCTGGACAAAAGAATACCATCACAGCTCAAGATCGAAAAGACCCAAACCAAAACACCGGAATCTCTATCCATGCCTGCAAAATCATCGCCACCGGTGACCTCCAAGCCTCCAAGGGTTCTTTCCCCACCTACCTTGGCCGCCCTTGGAAATTATACTCTAGAGTCGTATACATGGTATCTTCTTTGGGAGACCATATTCATCCTCGCGGTTGGCTCGAATGGCAAGGTTCTTTTGCTCTTGACACTCTTTACTACGGCGAGTATATGAATTCTGGGCCAAGCGCCGCTGTAGGGCAGAGGGTTAAATGGCCAGGTTATCGAGTAATAACCTCTGCTATAGAAGCCACCAAATTTACTGTCGGACAGTTTATTTATGGCTCCTCCTGGTTGCCTTCTACTGGAGTGTCATTTTCAGCTGGATTATCTACTAACTAA 1809 50.64 MNNNYNKLHSSRSGDTPVTSFRVSNDHSNPPPPPPPSSSHRRILLISFFSILLITASTVSAVVLVHSRITTSTESHFPHNKPTQAISRACSLTLYPSLCISSLLSAPGSLSADVHDLVHISLNLTLQHLTKALYSTSQIPISQISNDPLAQSAYEDCMELLNDAVEAFSLSLFSTTATNHDVMTWLSAALTYHDTCTDGFSDVADPVKDQITAKLSDLSEMISNSLAIFSGFGGGDLPVENRRRRRLMESDEQWLAEENNGDGDFPRWVSGKDRRLLAAPISSIQADIVVAKDGSGKFKTVAEAIAAAPSSSSRRIVIYIKAGKYEEENLKVGRKKTNLMFVGDGKGITVISGGKSVYDKVTTFRTATFAGSGTGLILRDMTFENTAGPNKHQAVALRLSADHTVVFRSNVIGYQDTLYVHSNRQFFRECDIYGTIDFIFGNAAVVFQSCNIYARKPMSGQKNTITAQDRKDPNQNTGISIHACKIIATGDLQASKGSFPTYLGRPWKLYSRVVYMVSSLGDHIHPRGWLEWQGSFALDTLYYGEYMNSGPSAAVGQRVKWPGYRVITSAIEATKFTVGQFIYGSSWLPSTGVSFSAGLSTN 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6364490 6368025 - CmaCh15G010250.1 Cma15g01025 310175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01025 602 Gene3D - 281 599 IPR012334 -
Cma15g01025 602 MobiDBLite consensus disorder prediction 1 38 - -
Cma15g01025 602 SMART PMEI_2 81 228 IPR006501 GO:0004857
Cma15g01025 602 SUPERFAMILY Pectin lyase-like 284 598 IPR011050 -
Cma15g01025 602 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 84 230 IPR035513 -
Cma15g01025 602 TIGRFAM PME_inhib: pectinesterase inhibitor domain 60 230 IPR006501 GO:0004857
Cma15g01025 602 CDD PMEI-like_3 89 234 - -
Cma15g01025 602 ProSitePatterns Pectinesterase signature 2. 432 441 IPR033131 -
Cma15g01025 602 PANTHER PECTINESTERASE 40 599 - -
Cma15g01025 602 Gene3D Invertase/pectin methylesterase inhibitor family protein 83 232 IPR035513 -
Cma15g01025 602 MobiDBLite consensus disorder prediction 1 26 - -
Cma15g01025 602 Pfam Pectinesterase 287 584 IPR000070 GO:0030599|GO:0042545
Cma15g01025 602 PANTHER PECTINESTERASE 40 599 - -
Cma15g01025 602 Pfam Plant invertase/pectin methylesterase inhibitor 85 228 IPR006501 GO:0004857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma15g01025 Cma18g01316 CCT
Cma15g01025 Cma16g00050 CCT
Cma02g01117 Cma15g01025 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01025 Cma-Chr15:6364490 Cma17g01067 Cma-Chr17:7630092 4.62E-175 dispersed
Cma16g00836 Cma-Chr16:4743264 Cma15g01025 Cma-Chr15:6364490 5.48E-136 dispersed
Cma15g01025 Cma-Chr15:6364490 Cma16g00050 Cma-Chr16:219206 0 wgd
Cma15g01025 Cma-Chr15:6364490 Cma18g01316 Cma-Chr18:10105679 0 wgd
Cma15g01025 Cma-Chr15:6364490 Cma02g01117 Cma-Chr2:6634770 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01025 - - csv:101216816 989.178