Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01041 ATGGTGAAATCGGAGCGAGGGCATGATTCTTGGATTGGCTTGGAGGAGGAAGCTCAGAGAATTGAGATTGACGGGTGTGATTCTTCGATGTTGGCTGTGAAGAGTGATGGGGTGCGACTTTCTGCTTCTGCGTCTCAGCTTTCGAGTCATACTGCTTCTGATGGAAAATTAGGGTTTGGAGAACGCGCTTTCTCTGCTGCTGGAGCTGCCTTTCTTTCGGCTGTAATTGTAAATCCTCTTGATGTTGCAAAGACAAGGTTGCAAGCTCAAGCTGCAGGTGTTCCTTATTCGCATCCACTTAGTGACTTGACCAGTCGCATGGCATTTTTTGGACCAAACACGATGTTTGCAGATTTAAGGTGTTCTCCTTCATGTGCACGTGCGGGGATTCATGGTACAGTAGCAATATGTCCTCCAGATTGTTTTCAGTACAAAGGGACATTGGATGTTTTTTACAAAATTATTCGACAGGAAGGATTTGCGAGGTTGTGGAGAGGCACAAATGCTGGCCTAGCTCTTGCTGTTCCCACGGTGGGAATCTACTTACCTTGCTATGACATATTCCGTAATTGGTTAGAAGAGATCACTTCCCGAAATCTTCATAGTGCTTCTCCTTATGTTCCTTTAGTTGCTGGGGCATTGGCGCGTTCTTTGGCTTGTGCAACTTGTTATCCAATAGAGCTTGCTAGAACTCGCATGCAGGCATTGAAGGAGATGCAAATTGGCAAAAAGCCGCCTGGAGTCTGGCAGACTTTACTAGGTATCGTCTCCAATGTTAAGAGCACAAATGGTGAAGCCGCCTCAAAAAGTTACCGTGCCCTATGGACTGGAATGGGGGCGCAGCTTGCACGTGATGTTCCATTCTCAGCAATTTGTTGGTCAACCCTTGAACCAGTCAGAAAGAAACTCATTGGATTGGTAGGTGACGACGCTAGTGCAGCCACTGTGTTTGGGGCCAACTTTTCTGCTGGTTTTGCTGCTGGAAGTCTTGCTGCTGCCACTACATGCCCCCTGGATGTTGCAAAAACCCGACGACAGATAGAGAAGGATCCGGTAAGGGCACTGAGTATGACAACAAGGCAGACACTGATGGAGGTTTGGAGGGATGGTGGGCTGAAAGGACTATTTGCAGGAGTTGGACCGCGCGTTGGCCGTGCAGGCCCATCAGTTGGGATAGTGGTATCATTTTACGAAGTTGTGAAATATGTTCTTCATCACAAATATCCAACCTCAGCTTCATGA 1242 47.5 MVKSERGHDSWIGLEEEAQRIEIDGCDSSMLAVKSDGVRLSASASQLSSHTASDGKLGFGERAFSAAGAAFLSAVIVNPLDVAKTRLQAQAAGVPYSHPLSDLTSRMAFFGPNTMFADLRCSPSCARAGIHGTVAICPPDCFQYKGTLDVFYKIIRQEGFARLWRGTNAGLALAVPTVGIYLPCYDIFRNWLEEITSRNLHSASPYVPLVAGALARSLACATCYPIELARTRMQALKEMQIGKKPPGVWQTLLGIVSNVKSTNGEAASKSYRALWTGMGAQLARDVPFSAICWSTLEPVRKKLIGLVGDDASAATVFGANFSAGFAAGSLAAATTCPLDVAKTRRQIEKDPVRALSMTTRQTLMEVWRDGGLKGLFAGVGPRVGRAGPSVGIVVSFYEVVKYVLHHKYPTSAS 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6513733 6518328 - CmaCh15G010410.1 Cma15g01041 310191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01041 413 ProSiteProfiles Solute carrier (Solcar) repeat profile. 57 191 IPR018108 -
Cma15g01041 413 SUPERFAMILY Mitochondrial carrier 58 399 IPR023395 -
Cma15g01041 413 Pfam Mitochondrial carrier protein 204 303 IPR018108 -
Cma15g01041 413 Pfam Mitochondrial carrier protein 317 406 IPR018108 -
Cma15g01041 413 Pfam Mitochondrial carrier protein 57 193 IPR018108 -
Cma15g01041 413 PANTHER FI19922P1-RELATED 34 411 IPR045315 GO:1990542
Cma15g01041 413 PANTHER BNACNNG35730D PROTEIN 34 411 - -
Cma15g01041 413 Gene3D Mitochondrial carrier domain 38 132 IPR023395 -
Cma15g01041 413 ProSiteProfiles Solute carrier (Solcar) repeat profile. 203 302 IPR018108 -
Cma15g01041 413 ProSiteProfiles Solute carrier (Solcar) repeat profile. 315 403 IPR018108 -
Cma15g01041 413 Gene3D Mitochondrial carrier domain 133 410 IPR023395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01041 K15119 SLC25A39_40; solute carrier family 25, member 39/40 - csv:101220455 684.485
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01041 Cma-Chr15:6513733 Cma03g00398 Cma-Chr3:4424514 3.37E-10 dispersed
Cma14g02084 Cma-Chr14:14422029 Cma15g01041 Cma-Chr15:6513733 1.14E-170 transposed
Cma15g01041 Cma-Chr15:6513733 Cma02g01100 Cma-Chr2:6538447 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g853 . . . . . . . . . . . Cma15g01041 . Car15g00971 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe12g00370 . . . . Cmo15g01101 . . . . . . Bhi12g00610 . . . . . . . . . . . . . Lsi09g00041 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003249 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 11 3 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01041 Cma_Chr15 FPKM 3.057823 2.475076 6.755079 6.505177 3.57923 3.618174 3.509777 1.957673 2.672707 2.046789