Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01059 ATGGAACAGAAGCACATTTTTCTGTCTGCTTTGGGTGTTGGTGTCGGGGTGGGCCTTGGATTAAGCTCTGGACAAGCTGTTGGAAAATGGGTTGGAGTGAATGCCTCTTCTGAGGTGATTACAGGACAAAAGATTGAACAGGAGCTCACCAGGCAGCTGCTTGATGGCAAAAACAGCAATGTCACCTGTGATGAGTTTCCTTATTATCTAAGCGAGAGGACGCGGGTGCTTTTGATGAGTGCTGCATATGTTCATTTGAAGCACTGCGACATCTCGAGGCACACCAGAAACCTTTCACCAGCAAGTCGAGCTATTTTGCTTTCAGGACCAACAGAACTTTACCAGCAGATGCTTGCCAAGGCTCTCGCGCATCACTTCGAGTCAAAGTTGCTGTTGTTAGACGTTTCCGACTTTTCACTGAAGATGCAGAGCAAATATGGCTGTCCCAAGAAAGAATCTTCATTTAAGAGGTCCATTTCCGAGGTGACATTGGAGCGAATGTCGAGCATTTGGGATTCCTTCTCGATTCTTCCGACAAGTGGGAATACCTGTGGAAACCTAAGAAGGCAAAGCAGTACGACCGACATTCCATCGAGATGTGCCGAGGGCTCGTCCAATCCTCCAAAACTTCGGAGAAACGCTTCTGCTGCATCTGATATTAGTAGTATCTCATCAAACTATGCTTCAACAAACCCAGCTTCTGTCAAGCGCACAAATGGTTGGTGTTTTGATGAGAAACTTTTTCTTCAGTCACTTTATAAGGTCTTGATGTCGGTATCAGAAACGAGTTCCATAATTTTGTATCTGAGAGATGTTGAGAGACTTCTTCTTCAGTCACCAAGGATGTACAATCTGTTCCATAGATTTCTGAACAAGCTCTCGGGATCTATTTTAGTACTCGGTTCCCGATTAGTCGATGTCGAAAATGATTGCGGAGATGTTGACAACAGATTGACGAGTTTATTCCGGTATAGTGTTGAGATTCGGCCCCCTGAAGATGAGAACCATCTTGTCAGCTGGAAATCTCAATTGGCAGAAGACATGAAGATGATTCAGTTCCAAGATAATAAAAACCACATTGCTGAAGTACTTGCTGCAAATGATCTTGAATGCGATGATCTTGGTTCAATTTGCCATGCAGACACCATGGTTCTCAGTAATTATATTGAAGAAATCGTCGTGTCGGCGATATCCTATCATTTGATGAACAACAGGGATCCAGAATACCGAAACGGAAAACTTTTGATATCTTCCAAGAGTATATCCCATGGATTGAGTATATTCCAGGAAGGAAATAATGAAGGAAAAGACACTCTAAAGCTAGAGACGAACGCAGAATCATCTAAGGTAGCCCAGAGGGACGAGGCGATTGGGGCAAAGACGGAATCGAAATCTGAAAACCCAGCTGCAGAAAACAGAAATGAGGCAGAGAAATCTGTTCCTATAGTGAAAAAAGATGTTGAAAATGTACCTCCACAAAAAGCACCTGAAATTCCTCCCGACAACGAATTTGAAAAGCGTATAAGACCCGAGGTTATCCCTGCAAATGAAATTGGGGTGACATTTGAAGACATTGGTTCTATGAATGAGATCAAAGAGTCCTTACAGGAACTAGTTATGCTTCCTCTTCGTCGACCAGACCTCTTTAAAGGAGGTCTTCTTAAACCGTGTCGGGGCATTCTACTTTTCGGCCCTCCTGGAACGGGTAAAACAATGCTAGCAAAGGCCATTGCTAATGAAGCTGGAGCAAGTTTCATCAATGTTTCAATGTCCACAATCACTTCTAAATGGTTTGGGGAAGATGAAAAGAACGTCCGAGCATTGTTCACGCTTGCAGCAAAAGTCTCACCTACGATTATTTTTGTTGATGAAGTTGATAGCATGCTTGGCCAACGGACTAGAGTGGGAGAGCACGAGGCCATGCGGAAGATTAAGAATGAATTCATGTCACACTGGGATGGACTCCTGACTAGGAATGATGAACGAATACTAGTTCTTGCTGCAACCAACAGGCCATTTGACCTCGATGAAGCAATCATTAGGCGATTCGAGCGCAGAATTATGGTTGGTCTTCCGTCCGTGGAGAGCAGGGAAATGATCATGAGAACTCTTCTATCAAAGGAGAAGGCTGAAGATCTTGATTTCAAGGAGCTTGCAACTATGACAGAAGGATACAGTGGAAGTGATCTCAAGAATTTGTGTGTGACCGCAGCTTATCGGCCTGTTCGGGAGCTCTTGCAACAAGAGAGATTGAAGGATTTGGAAAAGAAGCAGAGTGAGATGAAGGAGAAGGAGAAGGAGACGAAAAATGAGATCGAGATCGAGAAGGAGACCAAAAATGATTTGGAAAACACTACAGTTACGAATGAGGCAGGAAAAGAGGAACAAGTCATCATTCTGAGGCCTTTAAATATGGATGATATGAGGCAGGCCAAAAATCAGGTTGCTGCAAGTTTTGCTTCTGAGGGATCAGTTATGAATGAGTTGAAGCAATGGAATGATTTGTATGGAGAGGGAGGTTCGAGAAAAAAGCAACAGCTTACATACTTCCTATAG 2556 43.58 MEQKHIFLSALGVGVGVGLGLSSGQAVGKWVGVNASSEVITGQKIEQELTRQLLDGKNSNVTCDEFPYYLSERTRVLLMSAAYVHLKHCDISRHTRNLSPASRAILLSGPTELYQQMLAKALAHHFESKLLLLDVSDFSLKMQSKYGCPKKESSFKRSISEVTLERMSSIWDSFSILPTSGNTCGNLRRQSSTTDIPSRCAEGSSNPPKLRRNASAASDISSISSNYASTNPASVKRTNGWCFDEKLFLQSLYKVLMSVSETSSIILYLRDVERLLLQSPRMYNLFHRFLNKLSGSILVLGSRLVDVENDCGDVDNRLTSLFRYSVEIRPPEDENHLVSWKSQLAEDMKMIQFQDNKNHIAEVLAANDLECDDLGSICHADTMVLSNYIEEIVVSAISYHLMNNRDPEYRNGKLLISSKSISHGLSIFQEGNNEGKDTLKLETNAESSKVAQRDEAIGAKTESKSENPAAENRNEAEKSVPIVKKDVENVPPQKAPEIPPDNEFEKRIRPEVIPANEIGVTFEDIGSMNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESREMIMRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELLQQERLKDLEKKQSEMKEKEKETKNEIEIEKETKNDLENTTVTNEAGKEEQVIILRPLNMDDMRQAKNQVAASFASEGSVMNELKQWNDLYGEGGSRKKQQLTYFL 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6706621 6713407 + CmaCh15G010590.1 Cma15g01059 310209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01059 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 520 776 IPR027417 -
Cma15g01059 851 ProSitePatterns AAA-protein family signature. 663 682 IPR003960 GO:0005524|GO:0016887
Cma15g01059 851 Pfam AAA+ lid domain 712 755 IPR041569 -
Cma15g01059 851 MobiDBLite consensus disorder prediction 756 790 - -
Cma15g01059 851 CDD AAA 558 691 - -
Cma15g01059 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 364 IPR027417 -
Cma15g01059 851 Pfam ATPase family associated with various cellular activities (AAA) 560 690 IPR003959 GO:0005524|GO:0016887
Cma15g01059 851 MobiDBLite consensus disorder prediction 187 201 - -
Cma15g01059 851 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 851 - -
Cma15g01059 851 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 851 - -
Cma15g01059 851 Gene3D - 693 818 - -
Cma15g01059 851 MobiDBLite consensus disorder prediction 756 783 - -
Cma15g01059 851 Coils Coil 747 785 - -
Cma15g01059 851 SMART AAA_5 556 693 IPR003593 -
Cma15g01059 851 Gene3D - 520 821 IPR027417 -
Cma15g01059 851 MobiDBLite consensus disorder prediction 443 481 - -
Cma15g01059 851 MobiDBLite consensus disorder prediction 187 212 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01059 - - - csv:101216426 1447.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00716 Cma-Chr4:3627520 Cma15g01059 Cma-Chr15:6706621 0 dispersed
Cma15g01059 Cma-Chr15:6706621 Cma17g01099 Cma-Chr17:7736117 2.00E-14 dispersed
Cma15g01059 Cma-Chr15:6706621 Cma16g00575 Cma-Chr16:2963731 0 wgd
Cma15g01059 Cma-Chr15:6706621 Cma02g01088 Cma-Chr2:6468535 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g810 . Blo15g00108 . . . . . . . . . Cma15g01059 . Car15g00982 . Cpe05g00632 . . . . . . . . Cla01g00082 Cam01g0082 Cec01g0083 Cco01g0083 Clacu01g0082 Cmu01g0084 Cre09g2425 . . . Cone15ag0049 . Csa05g00095 Chy09g01399 . . . . . . . . . . . Cmo15g01117 . . . . . Cpe13g00283 Bhi12g00764 . . . . . Lcy12g0068 . . . . . . . Lsi09g00068 . . Cme09g01945
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01059 Cma_Chr15 FPKM 29.066458 29.200851 11.510865 11.055588 13.33117 13.642365 12.811992 6.625372 6.602221 6.661445