Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01067 ATGGCGGCCGGAAACAATGACTGGGATCTCTCCGCCGTCGTCCGGAGCTGCAATTCAGCAGCTTACAGGACAACCCCAACTGCCACCGCCGCCACAGAAACCGACTTGTCTTGTCTCGCCTCTTTAACATTCAACGACGATCCAAACGACGTCGCATTCTCCTTTCCCGACATACTTCAACCCCAACAACAACACGACGGCTTCGATGAATTACACCAAGCTATCTGTTTTCTTCCCAACTCCATCACCGCCGCCGTCACCATCGCGCCGGAAATTCCCACCGCCACCACAAACCGTTACTTTCAAGAGGAAATTACACCCTTTCTGCCGCAGCCGGATCCTGTGGAGGCGGCAGAGACGGCGGCGGCGCTGCAGAACCATCACCACCACCAAATCCAGCCTTCGTTCCCGCCGGAATTCCCAAATTCGCCAATGGTGCAATCTAACATACCTAAATCGAGAAAAAGAAAAAATCAACAGAAGAGAACTGTATGCCATGTTACTGCAGATAATCTCTCAACAGACATGTGGGCTTGGCGTAAGTATGGGCAAAAGCCCATTAAAGGATCTCCATATCCAAGAAACTATTACCGTTGCAGCAGCTCAAAAGGGTGTGGGGCCAGAAAGCAAGTTGAACGGAGCAACGCCGATCCCGATTCTTTCATCATCACTTACACCGGCGAACACATTCATCCACGTCCGACTCACCGGAATTTCCTCGCCGGAAGTTCACGGAACAGGTCACTCTCCTCCGTCACCAACAAAAACCCCACTGGAGATCCCAATCCATCTCTGACCACCACTGCTCTGGTGGGCTCTGGTTCTTCACCGGCTGATTCTCCGATGACACCGTTCAACGATGACTATGGCGGAGGAGACGAGAAAGAGGGAGAGATGTTTGAGGATATGGCGATCGATAGCGATGATGATTACGACGATATTCTGATTCCAAACTTGATGGTGAGAGATGAAATCTTTGCTGGAAACTATTACCGTTGCAGCAGCTCAAAAGGGTGTGGGGCCAGAAAGCAAGTTGAACGGAGCAACGCCGATCCCGATTCTTTCATCATCACTTACACCGGCGAACACATTCATCCACGTCCGACTCACCGGAATTTCCTCGCCGGAAGTTCACGGAACAGGTCACTCTCCTCCGTCACCAACAAAAACCCCACTGGAGATCCCAATCCATCTCTGACCACCACTGCTCTGGTGGGCTCTGGTTCTTCACCGGCTGATTCTCCGATGACACCGTTCAACGATGACTATGGCGGAGGAGACGAGAAAGAGGGAGAGATGTTTGAGGATATGGCGATCGATAGCGATGATGATTACGACGATATTCTGATTCCAAACTTGATGGTGAGAGATGAAATCTTTGCTGGAAACTATTACCGTTGCAGCAGCTCAAAAGGGTGTGGGGCCAGAAAGCAAGTTGAACGGAGCAACGCCGATCCCAATTCTTTCATCATCACTTACACCGGCGAACACATTCATCCACGTCCGACTCACCGGAATTTCCTCGCCGGAAGTTCTCGGAACAGGTCACTCTCCTCCGTCACCAACAAAAACCCCACTGGAGATCCCAATCCATCTCTGACCACCACGGCTCTGGTGGGCTCTGGTTCTTCACCGGCTGATTCTCCGATGACACCGTTCAACGATGACTATGGCGGAGGAGACGAGAAAGAGGGAGAGATGTTTGAGGATATGGCGATCGATAGCGATGATGATTACGACGATATTCTGATTCCAAACTTGATGGTGAGAGATGAAATCTTTGCTGGAAACTATTACCGTTGCAGCAGCTCAAAAGGGTGTGGGGCCAGAAAGCAAGTTGAACGGAGCAACGCCGATCCCAATTCTTTCATCATCACTTACACCGGCGAACACATTCATCCACGTCCGACTCACCGGAATTTCCTCGCCGGAAGTTCTCGGAACAGGTCACTCTCCTCCGTCACCAACAAAAACCCCACTGGAGATCCCAATCCATCTCTGACCACCACGGCTCTGGTGGGCTCTGGTTCTTCACCGGCTGATTCTCCGATGACACCGTTCAACGATGACTATGGCGGAGGAGACGAGAAAGAGGGAGAGATGTTTGAGGATATGGCGATCGATAGCGATGATGATTACGACGATATTCTGATTCCAAACTTGATGGTGAGAGATGAAATCTTTGCTGGGTTTGATGAGATTAGGAGGCGGCGACCACCATAA 2223 51.01 MAAGNNDWDLSAVVRSCNSAAYRTTPTATAATETDLSCLASLTFNDDPNDVAFSFPDILQPQQQHDGFDELHQAICFLPNSITAAVTIAPEIPTATTNRYFQEEITPFLPQPDPVEAAETAAALQNHHHHQIQPSFPPEFPNSPMVQSNIPKSRKRKNQQKRTVCHVTADNLSTDMWAWRKYGQKPIKGSPYPRNYYRCSSSKGCGARKQVERSNADPDSFIITYTGEHIHPRPTHRNFLAGSSRNRSLSSVTNKNPTGDPNPSLTTTALVGSGSSPADSPMTPFNDDYGGGDEKEGEMFEDMAIDSDDDYDDILIPNLMVRDEIFAGNYYRCSSSKGCGARKQVERSNADPDSFIITYTGEHIHPRPTHRNFLAGSSRNRSLSSVTNKNPTGDPNPSLTTTALVGSGSSPADSPMTPFNDDYGGGDEKEGEMFEDMAIDSDDDYDDILIPNLMVRDEIFAGNYYRCSSSKGCGARKQVERSNADPNSFIITYTGEHIHPRPTHRNFLAGSSRNRSLSSVTNKNPTGDPNPSLTTTALVGSGSSPADSPMTPFNDDYGGGDEKEGEMFEDMAIDSDDDYDDILIPNLMVRDEIFAGNYYRCSSSKGCGARKQVERSNADPNSFIITYTGEHIHPRPTHRNFLAGSSRNRSLSSVTNKNPTGDPNPSLTTTALVGSGSSPADSPMTPFNDDYGGGDEKEGEMFEDMAIDSDDDYDDILIPNLMVRDEIFAGFDEIRRRRPP 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6759134 6762945 - CmaCh15G010670.1 Cma15g01067 310217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01067 740 SUPERFAMILY WRKY DNA-binding domain 455 502 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma15g01067 740 MobiDBLite consensus disorder prediction 373 416 - -
Cma15g01067 740 MobiDBLite consensus disorder prediction 641 684 - -
Cma15g01067 740 SUPERFAMILY WRKY DNA-binding domain 321 368 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma15g01067 740 ProSiteProfiles WRKY domain profile. 589 636 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma15g01067 740 MobiDBLite consensus disorder prediction 507 550 - -
Cma15g01067 740 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 6 327 - -
Cma15g01067 740 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 461 595 - -
Cma15g01067 740 Pfam WRKY DNA -binding domain 460 499 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma15g01067 740 Pfam WRKY DNA -binding domain 326 365 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma15g01067 740 Pfam WRKY DNA -binding domain 175 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma15g01067 740 Pfam WRKY DNA -binding domain 594 633 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma15g01067 740 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 461 595 IPR044810 GO:0003700
Cma15g01067 740 SUPERFAMILY WRKY DNA-binding domain 168 234 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma15g01067 740 Gene3D WRKY domain 156 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma15g01067 740 ProSiteProfiles WRKY domain profile. 168 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma15g01067 740 MobiDBLite consensus disorder prediction 367 418 - -
Cma15g01067 740 ProSiteProfiles WRKY domain profile. 321 368 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma15g01067 740 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 327 461 IPR044810 GO:0003700
Cma15g01067 740 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 327 IPR044810 GO:0003700
Cma15g01067 740 MobiDBLite consensus disorder prediction 232 296 - -
Cma15g01067 740 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 595 734 - -
Cma15g01067 740 MobiDBLite consensus disorder prediction 506 552 - -
Cma15g01067 740 MobiDBLite consensus disorder prediction 640 698 - -
Cma15g01067 740 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 327 461 - -
Cma15g01067 740 Gene3D WRKY domain 586 637 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma15g01067 740 Gene3D WRKY domain 452 503 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma15g01067 740 Gene3D WRKY domain 318 369 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma15g01067 740 ProSiteProfiles WRKY domain profile. 455 502 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma15g01067 740 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 595 734 IPR044810 GO:0003700
Cma15g01067 740 MobiDBLite consensus disorder prediction 239 282 - -
Cma15g01067 740 SUPERFAMILY WRKY DNA-binding domain 589 636 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma15g01067 740 SMART WRKY_cls 588 635 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma15g01067 740 SMART WRKY_cls 173 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma15g01067 740 SMART WRKY_cls 454 501 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma15g01067 740 SMART WRKY_cls 320 367 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01084 Cma15g01067 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01087 Cma-Chr6:7334632 Cma15g01067 Cma-Chr15:6759134 9.29E-19 dispersed
Cma15g01067 Cma-Chr15:6759134 Cma18g00530 Cma-Chr18:3291663 9.46E-17 dispersed
Cma14g02067 Cma-Chr14:14362158 Cma15g01067 Cma-Chr15:6759134 1.14E-18 wgd
Cma15g01067 Cma-Chr15:6759134 Cma16g00580 Cma-Chr16:2998775 3.66E-17 wgd
Cma15g01067 Cma-Chr15:6759134 Cma02g01084 Cma-Chr2:6451561 2.94E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36460 PF03106 WRKY 1.60E-24 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01067 - K13425 cmo:103482922 423.705