Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01085 ATGACTGAAAGTGCTATGGCGGTAGTCAAACCTGAGATGAAGTCTTATATTTGGCTTCAAACTGCTGATGGCTCAATACAACAAGTTGAAGAAGAAGTTGCTATGTTTTGCCCTATGATTTGTCGGGAAATACTCCAAACAGGGATGGGATCCTCCAAGAATTATGCAATATCTCTTCCGCAGCGAGTGAATCCTGCTATATTAGGCTTAATTCTTGACTATTGCAGGTTCCATCAAGTACCGGGTCGCTCCAATAAGGAGCGTAAGACGTTTGATGAGAAATTCATTCGCATGGATACAAAAAAGCTATGTGAGTTGACATCTGCTGCTGACAGCCTCCAGTTGAAACCGTTGGTTGATCTAACTAGTCGAGCACTTGCTCGAATTATTGAAGGAAAGACTCCAGAGGAGATAAGGGAGACATTTCACCTACCTGATGATCTCACAGAGGAAGAAAAGTTGGAGCCCTTACGCAACATAACAGATGATCCACGCATTCGGCTCTTAAATAGATTATATGCACGGAAAAGGAAAGAATTAAGAGAAAGAGAGAAATTAAAGAATGTTGAGATCGAGGAGCGGGTGGATGATAGATCAGTCGATGACCTTCTGTCATTTATAAATGGAGGAGATGGAGATTCAAAGGCAGTAAAAGCAAACAAAAACAAAAAGAAAAATCGGAGGAGAAAGGATCAACAGAAGGATTCTTCTTCAACCAATGAGAATGGGAACCATGATAAAATAGAGGAGTTGGATGCACTTCCTTCTTGTTGCCAGAATAATGAGTTTGACAAGATTTCGGGGGCATCTCCGAGTAGAACTGTGAAATCACAGGATTCAGCAGTTTCCATATATTCATCTAAGAACGAGTTCGATGATGCTGATATGTACGATGATCTAGATCCTGCGATGAAGGAGGAACTTGACAGGGAAGTAGAAGACTTTGCTAGAAGATTGAATTCAGATTGGCCAGAAAGAGTGCAAGAAATTCTATCGCTAGGCCAAGAAAGAAAACTGGTGACCGTATTAAATGGCAATGGTTCATCAACCAGATTCACAAAACAGGTGCTGATAGGAGGTAGTAGTCTTCCTATCAGAGTTCGTAGCGGGATTGTGGGAGAAGCTACTGTTGGAGACATGAAAGGAAGCAAGAGTTTGCAGGATTTCAGTGTAAAAATGGTGGATGAGGAAGGTTTTATAGGCGTTATTATGACATGA 1218 41.38 MTESAMAVVKPEMKSYIWLQTADGSIQQVEEEVAMFCPMICREILQTGMGSSKNYAISLPQRVNPAILGLILDYCRFHQVPGRSNKERKTFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYARKRKELREREKLKNVEIEERVDDRSVDDLLSFINGGDGDSKAVKANKNKKKNRRRKDQQKDSSSTNENGNHDKIEELDALPSCCQNNEFDKISGASPSRTVKSQDSAVSIYSSKNEFDDADMYDDLDPAMKEELDREVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSTRFTKQVLIGGSSLPIRVRSGIVGEATVGDMKGSKSLQDFSVKMVDEEGFIGVIMT 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6905389 6909804 - CmaCh15G010850.1 Cma15g01085 310235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01085 405 MobiDBLite consensus disorder prediction 231 247 - -
Cma15g01085 405 PANTHER OS03G0107000 PROTEIN 1 266 - -
Cma15g01085 405 SMART skp1_3 14 115 IPR001232 GO:0006511
Cma15g01085 405 MobiDBLite consensus disorder prediction 262 281 - -
Cma15g01085 405 Pfam Skp1 family, tetramerisation domain 17 79 IPR016073 GO:0006511
Cma15g01085 405 PANTHER SKP1 1 266 IPR016897 GO:0006511
Cma15g01085 405 Pfam Skp1 family, dimerisation domain 116 153 IPR016072 GO:0006511
Cma15g01085 405 SUPERFAMILY POZ domain 15 79 IPR011333 -
Cma15g01085 405 Gene3D Potassium Channel Kv1.1; Chain A 10 160 IPR011333 -
Cma15g01085 405 SUPERFAMILY Skp1 dimerisation domain-like 90 157 IPR036296 GO:0006511
Cma15g01085 405 Coils Coil 169 189 - -
Cma15g01085 405 MobiDBLite consensus disorder prediction 211 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01085 - - - csv:101213448 657.136
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01085 Cma-Chr15:6905389 Cma16g01249 Cma-Chr16:9446850 2.11E-16 dispersed
Cma15g01085 Cma-Chr15:6905389 Cma05g00324 Cma-Chr5:1401541 1.54E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g719 Blo06g01134 . . . . Bpe07g00932 . . . . . Cma15g01085 . Car15g00998 . . . . . . . . . . . . . . . . . Cone1ag1171 Cone5ag0879 Cone14ag0074 Cone15ag0077 . . . . . . Bda06g00689 Bda15g00715 . Bpe12g00438 Bma08g00296 Bma12g01116 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003335 2 5 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 7 3 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01085 Cma_Chr15 FPKM 5.859606 7.374063 9.345766 8.591766 15.370957 14.308795 15.400984 12.299491 12.209829 11.845697