Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01088 ATGGATTCGTCTGCGAAAGTCGAGTCGAAGCTCAGAAGAGTTCCCAAGGGTTTCAACGAGGCGCGGAAGGTGCGGGTGGTTGCAAGGATTAAAAGCTTCGCTGATCAGGTACTAGATGGAGGTTCTATGGCGTCGTGGATCTCTGTGAACAAGCCTGACGGAGATGCTTCTGACTCTGTAACCATCTCTTTCGGAGGTCAACCAGTGAGTCGTAAGGAGACTTATGAAGTAGATTATTGCTATGAGCAGAATGAAGACACTGAAAAAATATTTGCAAAAGAGGTGAAACCTCTGATTTGTGGAGTCTTTGACGGTCATCATGCAACCGTTATTGCATATGGTGCAAGAGGCACTGGAAAAACTTCTACGATTCAGGGTACTATTGAGAAACCGGGTTTGGCATCATTATCCATGAATGAATTACTTTTAATGGCCAAAGAAAAAGGGAAGTCAATTTTCATATCCTACTATGAAGTTTATGTGGACCATGTTTATGATTTACTGGATCCGAAACGACCAACAGTTTTAGTATTGGATAACGGTCATGGCAAAATACAACTTAAGGGACTTTCGCAGATTCCAGTGAAATCCTTGTCAGACTTCTACGAACTATATTTGGGTTCTAGTTCACGTAAACAAGGGCAAAAGATTGCAAATGAATCCCCTCATAGAAGCCACCGGGGCTTGATAGTGCATATTTCATCTACCAATGAGGCTGCTTCGGATACTCATTCTGTTGCCAAGATGAATTTTGTTGACATGGCTGGTTATGAAGATGCGAGAAGGAAAAGTACTGATGGCACTAGCCTCGTCGAAAATAGTAAAATTAACAAGTTCACATACGCCTTGCTAAATGTTGCTTCTGCGTTGAATTCTAATGATAACCATGTGCCATATCGAGAAAGTAAGCTTACACGTATTCTGCAAGAATCCATGGGTGGAACGCAAAGCAAAATTTTGATGATTTCTTGCTTGAATTCATCATTTTGCCAAGACTCCATCTACATGGCTAACTTGGCGGCTAGATCTTGTCAAGTAACCAAGCGGGTTGCTTCGGATACCATTAGGAAAATGAAGAGTTCTACAAATTCTGTGGTGCATTCATCGCTTAGAAACCAGATACCTAAAAGCGTTTCTGCAACTGCAAAGAAGCAGACCATCTCCCGATCTTATTTTTCTGAAAAGAAGGCAAGCGTTAGTACAACCTCTTCCTATACAATAAAAGGAAGGAAGTTGTTTGAAGATGCAACAAGTCATTTGGGAAAACGGGACAAGGAAATTCAATTGCCAAGCGCATCTTCTGATTGTGTACCTCTGAAGTATGAAGAAGCTACTTCTGTTGTGGACCAGGCAAATCCCTTGCCGTGTTCTCTAAAGCCTGAAGAAGAATGTACTTCTGCATTGGAAAAGGAATTTTCTGCCGCAGGAATTTCCAGTGCAGTAGAAACTACCATAGCGCCAAAGGATGTTTCTAATAGCAATCATGATCCTGGAAGAATCATTGATGGCATGAATGCATTATCTGCCACTGGAGATGGTCCAAACATCAATGAGGGAAACAACCGTTCGATGATCAATATTGTTGATGAACTTCCCGTGGAAAGCACACCTGGCGTGACAAGTAGCACTAGTCTGTCTGTTGTTCAAAGTTCAGACTTGGACAAGGAAAACAATGGTTGTAGTACGATCAATGAAGATAAATCTCCTCCACTAAGTGCACAATTACAAGCATTATCCAACAATTGGAGATCAGTTTGTTCTTCCACACGGGCGTGCTTAAGGGTCTCTGATAATAATGCTCCCAATGGCTTAGTCTTCACTGATGTTACAGAACCACAAACTCCAACCATGGAACGGAGTTTGTGTGTCTACAATGAACAAGATGTTGTAAATCCATCCACTCCTTGGGAAACATTCAGCCAGCGCAGTACCGGTGTGAAGAAGTCACTTGTGGAAGATTATCTGAGGCTTCTAAATACAGCTAGCAAGGAAGAGCTGAAAAAATTGAAAGGAATTGGAGAGAAGAGAGCAACATCAATTATTGAATTCCGTGCAGAATCGCCTCAGCCTTTTAGAAGTCTAGATGATTTAATGGAGATCGGTCTGTCAGCAAAGCAGATTAAGGAAATGATGAAAAAGGAAGTTGCTGGGCTATTATTCAACTAG 2166 41.78 MDSSAKVESKLRRVPKGFNEARKVRVVARIKSFADQVLDGGSMASWISVNKPDGDASDSVTISFGGQPVSRKETYEVDYCYEQNEDTEKIFAKEVKPLICGVFDGHHATVIAYGARGTGKTSTIQGTIEKPGLASLSMNELLLMAKEKGKSIFISYYEVYVDHVYDLLDPKRPTVLVLDNGHGKIQLKGLSQIPVKSLSDFYELYLGSSSRKQGQKIANESPHRSHRGLIVHISSTNEAASDTHSVAKMNFVDMAGYEDARRKSTDGTSLVENSKINKFTYALLNVASALNSNDNHVPYRESKLTRILQESMGGTQSKILMISCLNSSFCQDSIYMANLAARSCQVTKRVASDTIRKMKSSTNSVVHSSLRNQIPKSVSATAKKQTISRSYFSEKKASVSTTSSYTIKGRKLFEDATSHLGKRDKEIQLPSASSDCVPLKYEEATSVVDQANPLPCSLKPEEECTSALEKEFSAAGISSAVETTIAPKDVSNSNHDPGRIIDGMNALSATGDGPNINEGNNRSMINIVDELPVESTPGVTSSTSLSVVQSSDLDKENNGCSTINEDKSPPLSAQLQALSNNWRSVCSSTRACLRVSDNNAPNGLVFTDVTEPQTPTMERSLCVYNEQDVVNPSTPWETFSQRSTGVKKSLVEDYLRLLNTASKEELKKLKGIGEKRATSIIEFRAESPQPFRSLDDLMEIGLSAKQIKEMMKKEVAGLLFN 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6927633 6934342 + CmaCh15G010880.1 Cma15g01088 310238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01088 721 Pfam Kinesin motor domain 68 333 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma15g01088 721 PANTHER KINESIN-LIKE PROTEIN KIN-10C 23 712 - -
Cma15g01088 721 Gene3D Kinesin motor domain 8 347 IPR036961 -
Cma15g01088 721 SUPERFAMILY RuvA domain 2-like 641 717 IPR010994 -
Cma15g01088 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 357 IPR027417 -
Cma15g01088 721 SMART HhH1_4 664 683 IPR003583 GO:0003677|GO:0006281
Cma15g01088 721 PANTHER KINESIN-RELATED 23 712 IPR027640 GO:0003777|GO:0007018
Cma15g01088 721 MobiDBLite consensus disorder prediction 534 568 - -
Cma15g01088 721 SMART kinesin_4 21 354 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma15g01088 721 ProSiteProfiles Kinesin motor domain profile. 23 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma15g01088 721 Pfam Helix-hairpin-helix motif 658 708 - -
Cma15g01088 721 MobiDBLite consensus disorder prediction 535 568 - -
Cma15g01088 721 Gene3D - 645 718 - -
Cma15g01088 721 PRINTS Kinesin heavy chain signature 105 126 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma15g01088 721 PRINTS Kinesin heavy chain signature 216 233 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma15g01088 721 PRINTS Kinesin heavy chain signature 248 266 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma15g01088 721 PRINTS Kinesin heavy chain signature 297 318 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01088 K10403 KIF22; kinesin family member 22 - csv:101218738 971.459
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00150 Cma-Chr14:621922 Cma15g01088 Cma-Chr15:6927633 1.09E-12 dispersed
Cma15g01088 Cma-Chr15:6927633 Cma01g01823 Cma-Chr1:12084107 3.17E-31 dispersed
Cma15g01088 Cma-Chr15:6927633 Cma12g01072 Cma-Chr12:8475904 2.60E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g714 . Blo15g00172 . . . Bpe07g00933 . . . . . Cma15g01088 . Car15g01000 . . . . . . . . . . Cla01g00444 Cam01g0467 Cec01g0456 Cco01g0478 Clacu01g0466 Cmu01g0444 Cre09g2068 Cone1ag1166 Cone5ag0876 . . . Csa05g00279 Chy09g01230 . . . Bda06g00688 . . . . Bma12g01117 . . Cmo15g01148 . . . . . Cpe13g00262 Bhi12g00497 . . . . . Lcy12g0037 . . . . . . . . . . Cme09g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009133 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01088 Cma_Chr15 FPKM 3.463007 4.636723 0.582085 0.613737 10.518338 8.968093 10.891688 0.248372 0.239039 0.299325