Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01099 ATGAACCGGAGCACTAAAACAGAGCCGGATTTTGGTTTTCTTGAGCCAATTCGCCGTCACTTGTTGGACGAACCGGAGGCTGCCGTCGTTCCCGGCGATCGGACTGGTACTTTCAGTAGCTTGATTCCATGTCTTGAAGAAAATTGGGGTAATTTGCCTCTCAAGGTGGACGATTCTGAAGATATGGTGCTCGCCGACGTTCTCCGGGAAGCTGTCGGTTCTGGATGGGTTCCGACGCTCAATCCGTCGTCGGTTGGAAGTTTCGATTTTGGGTTCTCGGCGGTGAAGTCGGAGCTTCCGGAGAGTTTTCCCCTGGTGGTGAAACTGGAGAGGGGGAAGCATTATAGAGGAGTGCGGCAACGACCATGGGGGAAGTTCGCGGCGGAGATTCGGGACCCGGCGAAAAATGGCGCTAGAGTTTGGCTTGGAACTTATGAGACGGCGGAGGATGCGGCTTTAGCTTATGATCGGGCAGCCTACCGAATTCGTGGGTCAAGGGCTCTTCTCAATTTCCCCCTTCGTGTGAACTCCGGCGAGCCCGAACCGGTTCGGGTCAGGTCGAAACGATCCTCGCCGGAGCTTTCATTGTCGCCGAAGCGGCGGAAGAAGGTTGGCTCCGCTGCGGAAGGTGGGGGAGTACAAGTGGAAAACACAAGTGGCAAGCCTTACATGTGGAGGGCAGCTGATTGTCAGCCAATGCTAATATTTAAATAA 714 54.48 MNRSTKTEPDFGFLEPIRRHLLDEPEAAVVPGDRTGTFSSLIPCLEENWGNLPLKVDDSEDMVLADVLREAVGSGWVPTLNPSSVGSFDFGFSAVKSELPESFPLVVKLERGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRIRGSRALLNFPLRVNSGEPEPVRVRSKRSSPELSLSPKRRKKVGSAAEGGGVQVENTSGKPYMWRAADCQPMLIFK 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6993319 6994032 - CmaCh15G010990.1 Cma15g01099 310249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01099 237 Gene3D AP2/ERF domain 113 175 IPR036955 GO:0003700|GO:0006355
Cma15g01099 237 MobiDBLite consensus disorder prediction 180 218 - -
Cma15g01099 237 Pfam AP2 domain 114 164 IPR001471 GO:0003700|GO:0006355
Cma15g01099 237 PANTHER DNA-BINDING DOMAIN 33 214 IPR044808 GO:0003700|GO:0009873
Cma15g01099 237 CDD AP2 113 172 IPR001471 GO:0003700|GO:0006355
Cma15g01099 237 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Cma15g01099 237 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Cma15g01099 237 ProSiteProfiles AP2/ERF domain profile. 114 172 IPR001471 GO:0003700|GO:0006355
Cma15g01099 237 PANTHER BNAANNG21280D PROTEIN 33 214 - -
Cma15g01099 237 SUPERFAMILY DNA-binding domain 114 174 IPR016177 GO:0003677
Cma15g01099 237 SMART rav1_2 114 178 IPR001471 GO:0003700|GO:0006355
Cma15g01099 237 MobiDBLite consensus disorder prediction 181 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01565 Cma-Chr2:8881341 Cma15g01099 Cma-Chr15:6993319 2.14E-112 dispersed
Cma15g01099 Cma-Chr15:6993319 Cma16g01116 Cma-Chr16:8582031 1.50E-79 dispersed
Cma15g01099 Cma-Chr15:6993319 Cma06g00802 Cma-Chr6:4221673 8.32E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36464 PF00847 AP2 2.20E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01099 K09286 - csv:101221583 307.375