Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01122 ATGGCATTCTCCCTTACCTCATTCTTCTTCTTCTTCATTTCCGTTCCGGCTTTCTTTCTCCTAGCCGCCGCCAAGCACCACCGCCACCACTGGGTCGGACACACCGGCCACCGCCTTATCAAAGTGGACGTCAAAGGCATCTCCGGCGAGTTCGTCTCCGTCCAAGCCGCCGTGGATGCAGTCCCCGATTACAATACCGTCAACACCCTCATCCGAATCAGCCCTGGTTATTACGTGGAGAAGGTGGTGGTGCCGGCGAAGAAGCCGTACATAACATTTGAAGGAGGGGGAAAAGAGACGACGGTGATAGAATGGCACGACAGAGCAGGTGACCGTGGTCCCAGCGGGCAGCAGCTGCGTACTTACAGAACAGCTTCTGTCACAGTTTTTGCTAATTACTTCTCTGCCCGAAACATCAGCTTCAAGAATACGGCACCGGCGCCGATGCCCGGAATGCAAGGGTGGCAGGCAGCGGCGTTTCGTATTTCCGGTGACAAGGCCTACTTTTCCGGGTGTGGATTCTACGGCGCACAGGACACCCTCTGTGACGACGCCGGCCGCCATTACTTCAAAGAATGCTACATCGAAGGCTCCATAGACTTCATTTTTGGAAACGGGCGTTCCATGTATAAGGATTGCGAGCTGCACTCGATCGCCACCCGGTTCGGTTCCATAGCGGCCCAAGATAGAAACTCGCCTAACGAGAAGACCGGGTTCGCTTTCGTCCGATGCAAGGTGACCGGTTCTGGACCGATATACGTGGGCCGGGCTATGGGCCAGTACTCCAGAATCGTCTACGCGTATACATACTTCGATGACGTGGTGGCCCATGGTGGATGGGATGACTGGGACCACACCAGCAACAAAAACCAGACTGTATTTTTTGGAGTATACAAGTGCTGGGGCCCAGGAGCAAGTAAAGTAAAGGGAGTATCATGGGCCAGGGAATTGGAGTTTGAAGAGGCCCATCCATTTCTTGTCAAGAGTTTTGTGAATGGTAGGCACTGGATTGCACCCTCTGATGCGTAG 1029 54.03 MAFSLTSFFFFFISVPAFFLLAAAKHHRHHWVGHTGHRLIKVDVKGISGEFVSVQAAVDAVPDYNTVNTLIRISPGYYVEKVVVPAKKPYITFEGGGKETTVIEWHDRAGDRGPSGQQLRTYRTASVTVFANYFSARNISFKNTAPAPMPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRNSPNEKTGFAFVRCKVTGSGPIYVGRAMGQYSRIVYAYTYFDDVVAHGGWDDWDHTSNKNQTVFFGVYKCWGPGASKVKGVSWARELEFEEAHPFLVKSFVNGRHWIAPSDA 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7148399 7151182 - CmaCh15G011220.1 Cma15g01122 310272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01122 342 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 23 341 - -
Cma15g01122 342 Gene3D - 37 341 IPR012334 -
Cma15g01122 342 PANTHER PECTINESTERASE 68-RELATED 23 341 - -
Cma15g01122 342 SUPERFAMILY Pectin lyase-like 40 339 IPR011050 -
Cma15g01122 342 Pfam Pectinesterase 48 333 IPR000070 GO:0030599|GO:0042545
Cma15g01122 342 ProSitePatterns Pectinesterase signature 2. 195 204 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00997 Cma-Chr9:5088741 Cma15g01122 Cma-Chr15:7148399 1.72E-93 dispersed
Cma10g00675 Cma-Chr10:3060694 Cma15g01122 Cma-Chr15:7148399 7.28E-109 dispersed
Cma11g00653 Cma-Chr11:3173508 Cma15g01122 Cma-Chr15:7148399 1.70E-108 dispersed
Cma12g00463 Cma-Chr12:2418868 Cma15g01122 Cma-Chr15:7148399 8.87E-88 dispersed
Cma14g00246 Cma-Chr14:1065408 Cma15g01122 Cma-Chr15:7148399 2.76E-88 dispersed
Cma15g01122 Cma-Chr15:7148399 Cma16g00496 Cma-Chr16:2537784 2.38E-89 dispersed
Cma15g01122 Cma-Chr15:7148399 Cma02g01541 Cma-Chr2:8751985 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01122 - - csv:101204661 639.802