Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01125 ATGAGTACGGGAGAACTCCTCAGCATCGAACCTCTCGAGCTCAAGTTTCCCTTCGAATTGAAGAAGCAGATCTGTTGTTCCCTTCAATTGTCTAACAAGACCGAGAGCTGCGTTGCATTTAAGGTGAAAACTACGAACCCTAAAAAGTACTGCGTTCGCCCAAACACTGGAATTGTCTCGCCACGATCAACATGCGACGTTATAGTCACAATGCAAGCCCAGAAAGAGGCTCCTCCTGATATGCAATGCAAAGACAAATTCCTCCTTCAGAGTGTTAAAACCGCTGATGGCGTAACCGCAAAGGATATCAATGCAGAAATGTTCAATAAGGAGGCTGGGCACGTGGTTGAGGAATTCAAATTGAAAGTCGTTTATGTTTCTCGACCGCAACCACCTTCTCCAGTTCCAGAAGGTTCCGAAGAAGGGTCCTCCCCAAGAGGTTCTTTTTCAGAGAATGGAAACTTCAATGATGCTGATTTGAATACTGCCACGAGGGGATACGTTGAACGGTCGGAGCCACAGGATAAATCTGCCGAGGCTAGAGCCCTCATAGCCAAACTCACAGAGGAAAAGAATAATGCCATGCAACAGAATAACAAACTTCGTCAGGAATTGGAACTTTTGAAGCGTGAAGGCAGGAAAAATGCCGGTGGCGTCTCCTTCCTAGCAAAATTAGCAGAAGAAAACCTGAATCAGAAGCAAGAAGAAGCCGCGGGGCGGACAAATACTTCCAATGGAAATGATCAGAGATTGAGAAGGTCGAAGTGA 768 46.09 MSTGELLSIEPLELKFPFELKKQICCSLQLSNKTESCVAFKVKTTNPKKYCVRPNTGIVSPRSTCDVIVTMQAQKEAPPDMQCKDKFLLQSVKTADGVTAKDINAEMFNKEAGHVVEEFKLKVVYVSRPQPPSPVPEGSEEGSSPRGSFSENGNFNDADLNTATRGYVERSEPQDKSAEARALIAKLTEEKNNAMQQNNKLRQELELLKREGRKNAGGVSFLAKLAEENLNQKQEEAAGRTNTSNGNDQRLRRSK 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7165823 7172161 + CmaCh15G011250.1 Cma15g01125 310275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01125 255 SUPERFAMILY PapD-like 2 141 IPR008962 -
Cma15g01125 255 MobiDBLite consensus disorder prediction 232 255 - -
Cma15g01125 255 PIRSF VAMP_assoc_prot 1 244 IPR016763 GO:0005789
Cma15g01125 255 Pfam MSP (Major sperm protein) domain 7 111 IPR000535 -
Cma15g01125 255 Gene3D Immunoglobulins 2 128 IPR013783 -
Cma15g01125 255 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Cma15g01125 255 MobiDBLite consensus disorder prediction 143 160 - -
Cma15g01125 255 Coils Coil 177 211 - -
Cma15g01125 255 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 1 221 IPR016763 GO:0005789
Cma15g01125 255 MobiDBLite consensus disorder prediction 129 160 - -
Cma15g01125 255 PANTHER VESICLE-ASSOCIATED PROTEIN 1-2-LIKE 1 221 - -
Cma15g01125 255 MobiDBLite consensus disorder prediction 235 249 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01125 - - - cmax:111468836 378.252
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma15g01125 Cma16g01109 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00865 Cma-Chr8:5338702 Cma15g01125 Cma-Chr15:7165823 7.38E-89 dispersed
Cma09g00899 Cma-Chr9:4447401 Cma15g01125 Cma-Chr15:7165823 1.04E-12 dispersed
Cma14g01647 Cma-Chr14:12315919 Cma15g01125 Cma-Chr15:7165823 1.50E-46 dispersed
Cma15g01125 Cma-Chr15:7165823 Cma17g00476 Cma-Chr17:2909341 6.28E-73 dispersed
Cma15g01125 Cma-Chr15:7165823 Cma02g01542 Cma-Chr2:8757487 7.60E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g534 Blo02g01044 Blo03g00161 Bda06g00029 Bda08g00576 Bpe05g00582 Bpe07g00176 . . . Cmo16g01161 . Cma15g01125 . Car15g01030 Sed04g1666 Cpe14g00917 . Bhi11g00073 Tan01g2092 Cmetu06g0529 . . Mch10g1587 . . . . . . . . . . . . . Csa05g00419 Chy09g01090 . Blo03g00417 . Bda07g00001 . . Bpe11g00268 Bma05g00421 Bma12g00643 . . Cmo15g01185 . Cma16g01109 . Car16g01047 . Cpe13g00231 Bhi12g00443 . . Lac11g2281 Hepe06g1669 . Lcy12g0040 Cla01g00395 Cam01g0412 Cec01g0403 Cco01g0424 Clacu01g0413 Cmu01g0394 Cre09g2117 Lsi09g00420 . . Cme09g01619
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000979 4 2 2 4 4 2 3 2 2 2 2 2 3 2 2 4 2 6 4 2 2 3 2 2 2 2 2 6 3 3 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01125 Cma_Chr15 FPKM 31.564665 36.684631 33.75845 30.090189 53.797153 46.00996 46.858692 29.501261 30.215767 28.129677