Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01126 ATGGGGGGTCATGGAGGTTTAAATATTCTTCCCCAAAAGCGGTGGAATGTGTACAACTATGAGAACAGAGAGAAAGTGCGGCGAGATGAAGAAGCTGCAGCCAAAGAAGAACAGCTTAAACGTGAGCAGTCTAGGAAAAGGGATGCTGAGTTTCGTCTCGAGCAGCTTCGTACTGCACGGGGTATAGCTCCAGTAATTGACACTACAAAGCCTGTAGAAACAGACCTGAAACCTGGTCACCTAAATCTGTTTGAAGGCATCAAAATTTTTGACCCAGTTAAGAGTTCAGAGAATGAGGGAGGTGAAGATGGGTCTAAGAAGAAGAGGATGAAGAAGGAAGAAGTGGAAAAAAGGGTTATTACAGCTGAAGATGAAAAGTATAAGTTAGGTTATGGTGTTGCTGGAAAGGGTGTCAAGTTGCCATGGTACCTTGAGCGGCGTAGCAAGGATGATGCTGAGAGTGATCAAAACGCTTCATCGTCAAGAGTAGTGAGCGAAAATGTAAAAAAAGGAGGAAAAAAGACCTTGGAAGAATTGAGGGCCGAGCGTTTGAAACGAGAGCAGAAGGAGAAGGGAAGGGAGCGTGCTTTAATTGCAGAGAGAAGTGGAAAGAGTGGAACAGCTTCAAGGGAAAGAGATTCATCATCCAGAAGGTGGAAATCCAGAAGATATGATTCAGGTTTTCAGGATCATTAA 696 44.11 MGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQSRKRDAEFRLEQLRTARGIAPVIDTTKPVETDLKPGHLNLFEGIKIFDPVKSSENEGGEDGSKKKRMKKEEVEKRVITAEDEKYKLGYGVAGKGVKLPWYLERRSKDDAESDQNASSSRVVSENVKKGGKKTLEELRAERLKREQKEKGRERALIAERSGKSGTASRERDSSSRRWKSRRYDSGFQDH 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7169636 7172261 - CmaCh15G011260.1 Cma15g01126 310276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01126 231 MobiDBLite consensus disorder prediction 147 231 - -
Cma15g01126 231 PANTHER OS10G0507500 PROTEIN 1 208 - -
Cma15g01126 231 PANTHER OS10G0507500 PROTEIN 1 208 - -
Cma15g01126 231 MobiDBLite consensus disorder prediction 93 116 - -
Cma15g01126 231 MobiDBLite consensus disorder prediction 26 49 - -
Cma15g01126 231 MobiDBLite consensus disorder prediction 167 231 - -
Cma15g01126 231 SMART Cir_N_3 14 50 IPR019339 -
Cma15g01126 231 Coils Coil 27 59 - -
Cma15g01126 231 Coils Coil 105 125 - -
Cma15g01126 231 MobiDBLite consensus disorder prediction 95 116 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01126 - - - cmax:111468837 431.409
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g530 . Blo03g00163 Bda06g00030 . . Bpe07g00174 . . . . . Cma15g01126 . Car15g01031 . . . . . . . . . . . . . . . . . . Cone12ag0379 . . . Csa05g00418 Chy09g01091 . . . . . . . . Bma12g00641 . . . . . . . . Cpe13g00230 Bhi12g00442 . . . . . Lcy12g1826 Cla01g00394 Cam01g0411 Cec01g0402 Cco01g0423 Clacu01g0412 Cmu01g0393 . . . . Cme09g01620
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011190 1 2 1 2 1 1 1 0 0 1 1 1 1 1 1 0 1 1 1 0 1 1 0 0 1 0 1 4 2 2 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01126 Cma_Chr15 FPKM 7.06451 7.563066 9.058793 8.121354 4.851663 5.121324 6.945524 9.678229 9.907797 10.285288