Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01127 ATGGCTAAGAGCTACTTCAAGCAAGAGCATGATCTTGAGAAAAGAAAAGCAGAGGCCGCAAGGATTAGAGAGAAATATCCTGATAGAATCCCAGTTATAGTGGAGAAGGCAGAGAGAAGTGACATCCCTAGCATTGATAAGAAGAAGTACCTAGTTCCAGCAGACCTTACGGTCGGACAGTTTGTTTATGTCATCCGTAAAAGGATTAAACTCAGCCCAGAGAAAGCGATCTTTATCTTCGTCGACAATGTCCTCCCTCCTACAGGAGCAATTATGTCTGCAATATATGAAGAGAAGAAGGATGAAGATGGATTCCTGTATGTTACTTACAGTGGAGAGAACACGTTCGGGTTCCGGTGGTAG 363 43.53 MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGFRW 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7174104 7177058 + CmaCh15G011270.1 Cma15g01127 310277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01127 120 Gene3D - 1 118 - -
Cma15g01127 120 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Cma15g01127 120 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Cma15g01127 120 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 1 118 IPR004241 -
Cma15g01127 120 CDD Ubl_ATG8 12 114 - -
Cma15g01127 120 PANTHER AUTOPHAGY-RELATED PROTEIN 1 118 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01127 K08341 GABARAP, ATG8, LC3; GABA(A) receptor-associated protein - csv:101205863 234.572
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00540 Cma-Chr3:5070785 Cma15g01127 Cma-Chr15:7174104 6.27E-59 dispersed
Cma15g01127 Cma-Chr15:7174104 Cma13g00744 Cma-Chr13:6558733 7.87E-68 dispersed
Cma15g01127 Cma-Chr15:7174104 Cma02g01544 Cma-Chr2:8768435 1.91E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g525 . . . . . . Bma07g01599 . . . . Cma15g01127 . Car15g01032 . . . . . . . . . . . . . . . . . Cone8ag0393 . Cone6ag0676 Cone9ag0681 . Csa05g00416 Chy09g01093 . . Blo19g00255 . Bda09g00097 Bpe08g00875 . . . . . Cmo15g01186 . . . . . Cpe13g00229 Bhi12g00436 . . Lac11g2279 . . Lcy12g1824 Cla09g01215 Cam09g1280 Cec09g1296 Cco09g1326 . . Cre09g1240 . . . Cme09g01622
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000267 6 8 5 7 6 4 7 4 4 5 4 4 5 5 5 6 4 9 4 3 5 4 4 3 2 2 4 9 8 5 151
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01127 Cma_Chr15 FPKM 36.669518 31.51297 57.770901 56.626953 13.003211 13.188754 13.759845 40.283791 41.41288 44.149174