Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01149 ATGTCATCCTCTTCCTCTTCTTCTTCTCCTACTTCTACTGCTACTGCTACCACTACCACTACCACTACCTTGTCTCAGCAGCAGCTGCTGGACCACCACCTTCCCGCCGCAGCTGAGCAGCTCTGTTATGTCCATTGCAACATTTGTGACACTGTCCTTGCGGTCAGTGTTCCTTGTTCTAGCTTGTTCAAAACTGTGACAGTGCGATGTGGACACTGCACCAATCTGCTGCCTGTCAACATGCGTGGCCTGCTCCTGCCTTCACCTAATCAATTTCATCACCTTGGCCACTCCCATAACATTCTGGAAAACATCCCCACTCCAAACCCCAATTATCTGATCAACCAGTTTGCAGCCACCAACAATTTTGGAACGCCATCTCGAGGAGTCATTGATGAGCTCCCCAGGCCCCCTGTCATCAACAGACCTCCAGAGAAGCGACAGAGAGTGCCTTCTGCATACAATCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCAGTGAATCCCGATATATCCCATAGAGAAGCCTTCAGCGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAACATCCGCCAGCAGGAAGGAGAGCAGAGTGTTCTAATGAAAGACAATGGAGGATTCTATGCCTCAGCAGCAGCCAACGTTGGTGTTTCCCATTTCTAG 711 50.21 MSSSSSSSSPTSTATATTTTTTTLSQQQLLDHHLPAAAEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHHLGHSHNILENIPTPNPNYLINQFAATNNFGTPSRGVIDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGEQSVLMKDNGGFYASAAANVGVSHF 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7308199 7310013 - CmaCh15G011490.1 Cma15g01149 310299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01149 236 SUPERFAMILY HMG-box 139 188 IPR036910 -
Cma15g01149 236 MobiDBLite consensus disorder prediction 1 20 - -
Cma15g01149 236 PANTHER AXIAL REGULATOR YABBY 3 1 234 - -
Cma15g01149 236 Gene3D High mobility group box domain 140 208 IPR036910 -
Cma15g01149 236 Pfam YABBY protein 37 195 IPR006780 GO:0007275
Cma15g01149 236 MobiDBLite consensus disorder prediction 128 147 - -
Cma15g01149 236 PANTHER PROTEIN YABBY 6-RELATED 1 234 IPR006780 GO:0007275
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00763 Cma15g01149 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01287 Cma-Chr5:9820965 Cma15g01149 Cma-Chr15:7308199 7.74E-54 dispersed
Cma10g00541 Cma-Chr10:2483897 Cma15g01149 Cma-Chr15:7308199 1.12E-50 dispersed
Cma11g00536 Cma-Chr11:2583470 Cma15g01149 Cma-Chr15:7308199 3.51E-55 dispersed
Cma12g01202 Cma-Chr12:9427635 Cma15g01149 Cma-Chr15:7308199 6.76E-51 dispersed
Cma15g01149 Cma-Chr15:7308199 Cma02g01557 Cma-Chr2:8833805 2.82E-139 wgd
Cma15g01149 Cma-Chr15:7308199 Cma06g00763 Cma-Chr6:3875334 2.31E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36467 PF04690 YABBY 8.50E-70 CL0114 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01149 K25796 - csv:101214748 384.03