Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01149 ATGTCATCCTCTTCCTCTTCTTCTTCTCCTACTTCTACTGCTACTGCTACCACTACCACTACCACTACCTTGTCTCAGCAGCAGCTGCTGGACCACCACCTTCCCGCCGCAGCTGAGCAGCTCTGTTATGTCCATTGCAACATTTGTGACACTGTCCTTGCGGTCAGTGTTCCTTGTTCTAGCTTGTTCAAAACTGTGACAGTGCGATGTGGACACTGCACCAATCTGCTGCCTGTCAACATGCGTGGCCTGCTCCTGCCTTCACCTAATCAATTTCATCACCTTGGCCACTCCCATAACATTCTGGAAAACATCCCCACTCCAAACCCCAATTATCTGATCAACCAGTTTGCAGCCACCAACAATTTTGGAACGCCATCTCGAGGAGTCATTGATGAGCTCCCCAGGCCCCCTGTCATCAACAGACCTCCAGAGAAGCGACAGAGAGTGCCTTCTGCATACAATCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCAGTGAATCCCGATATATCCCATAGAGAAGCCTTCAGCGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAACATCCGCCAGCAGGAAGGAGAGCAGAGTGTTCTAATGAAAGACAATGGAGGATTCTATGCCTCAGCAGCAGCCAACGTTGGTGTTTCCCATTTCTAG 711 50.21 MSSSSSSSSPTSTATATTTTTTTLSQQQLLDHHLPAAAEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHHLGHSHNILENIPTPNPNYLINQFAATNNFGTPSRGVIDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGEQSVLMKDNGGFYASAAANVGVSHF 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7308199 7310013 - CmaCh15G011490.1 Cma15g01149 310299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01149 236 SUPERFAMILY HMG-box 139 188 IPR036910 -
Cma15g01149 236 MobiDBLite consensus disorder prediction 1 20 - -
Cma15g01149 236 PANTHER AXIAL REGULATOR YABBY 3 1 234 - -
Cma15g01149 236 Gene3D High mobility group box domain 140 208 IPR036910 -
Cma15g01149 236 Pfam YABBY protein 37 195 IPR006780 GO:0007275
Cma15g01149 236 MobiDBLite consensus disorder prediction 128 147 - -
Cma15g01149 236 PANTHER PROTEIN YABBY 6-RELATED 1 234 IPR006780 GO:0007275
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01149 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101214748 384.03
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00763 Cma15g01149 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01287 Cma-Chr5:9820965 Cma15g01149 Cma-Chr15:7308199 7.74E-54 dispersed
Cma10g00541 Cma-Chr10:2483897 Cma15g01149 Cma-Chr15:7308199 1.12E-50 dispersed
Cma11g00536 Cma-Chr11:2583470 Cma15g01149 Cma-Chr15:7308199 3.51E-55 dispersed
Cma12g01202 Cma-Chr12:9427635 Cma15g01149 Cma-Chr15:7308199 6.76E-51 dispersed
Cma15g01149 Cma-Chr15:7308199 Cma02g01557 Cma-Chr2:8833805 2.82E-139 wgd
Cma15g01149 Cma-Chr15:7308199 Cma06g00763 Cma-Chr6:3875334 2.31E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g495 Blo02g01054 . Bda06g00039 Bda08g00564 Bpe05g00592 Bpe07g00159 . Bma14g00033 Cmo06g00784 . . Cma15g01149 . Car15g01044 . . . . . . . . . . Cla10g00285 Cam10g0296 Cec10g0303 Cco10g0299 Clacu10g0295 Cmu10g1134 Cre10g0542 . . Cone6ag0698 Cone9ag0698 Lsi07g01331 Csa05g00395 Chy09g01118 Cme06g02614 Blo03g00407 . Bda07g00010 . . Bpe11g00259 . . . . Cmo15g01209 Cma06g00763 . Car06g00681 . Cpe08g00754 Cpe13g00219 Bhi12g00406 . . . . . Lcy12g1797 Cla01g00368 Cam01g0388 Cec01g0381 Cco01g0399 Clacu01g0387 Cmu01g0368 Cre09g2142 Lsi09g00397 Csa03g00304 Chy06g02018 Cme09g01648
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g01709 CCT 17 174 C2C2-YABBY Transcription Factor Family AT1G69180 55.7 9.2e-44 174.1
Cma02g01557 . 71 231 C2C2-YABBY Transcription Factor Family AT2G45190 59.5 1.9e-43 172.9
Cma15g01149 CCT 81 236 C2C2-YABBY Transcription Factor Family AT2G45190 57.4 1.2e-42 170.2
Cma02g01297 . 1 176 C2C2-YABBY Transcription Factor Family AT1G08465 62.5 7.2e-52 201.1
Cma11g00536 . 40 214 C2C2-YABBY Transcription Factor Family AT1G08465 54.7 1.0e-42 170.6
Cma02g01557 . 27 219 C2C2-YABBY Transcription Factor Family AT1G08465 52.6 1.4e-42 170.2
Cma15g01149 CCT 37 224 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 1.8e-42 169.9
Cma10g00541 . 5 176 C2C2-YABBY Transcription Factor Family AT1G08465 50.8 1.7e-37 153.3
Cma06g00763 CCT 19 187 C2C2-YABBY Transcription Factor Family AT1G08465 52.7 2.2e-37 152.9
Cma02g01557 . 38 230 C2C2-YABBY Transcription Factor Family AT4G00180 57.0 4.0e-51 198.7
Cma15g01149 CCT 48 235 C2C2-YABBY Transcription Factor Family AT4G00180 56.0 2.0e-50 196.4
Cma04g01741 CST 1 160 C2C2-YABBY Transcription Factor Family AT1G23420 52.0 2.1e-36 150.2
Cma11g00536 . 42 210 C2C2-YABBY Transcription Factor Family AT2G26580 72.2 3.6e-63 238.4
Cma05g01287 . 8 170 C2C2-YABBY Transcription Factor Family AT2G26580 72.4 4.4e-61 231.5
Cma12g01202 . 8 168 C2C2-YABBY Transcription Factor Family AT2G26580 69.1 3.3e-56 215.3
Cma10g00541 . 7 165 C2C2-YABBY Transcription Factor Family AT2G26580 69.2 7.3e-56 214.2
Cma02g01297 . 1 176 C2C2-YABBY Transcription Factor Family AT2G26580 55.1 2.3e-46 182.6
Cma15g01149 CCT 37 196 C2C2-YABBY Transcription Factor Family AT2G26580 56.4 2.9e-44 175.6
Cma02g01557 . 29 191 C2C2-YABBY Transcription Factor Family AT2G26580 54.2 5.4e-43 171.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36467 PF04690 YABBY 8.50E-70 CL0114 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01149 Cma_Chr15 FPKM 0.0 0.0 0.79235 0.0 108.894035 123.484177 106.372246 0.0 0.0 0.0