Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01162 ATGGGAATCAAAGGCGTCTCCTCGGCGCCCGGCGATTTCATCTACTTCAAATCTCAGGTCCCTCTTCACCGGATTCCTATTGGCACCAAACAATGGCGATACTATGATTTTGGTCCGAAAGTCGTACCGCCTCTTATCTGTCTTCCTGGAATAGCGGGGACGGCAGATGTCTATTACAAACAAATTATGTTTTTGTCAATGAAGGGTTATCGGATAATTTCTGTTGATATTCCACGTGTATGGAATCATCAAGAGTGGATTCAAGCATTTGAAAAGTTCTTGGATGCTATAGATGTTCATCGTATACATCTCTATGGCACTTCACTCGGGGGCTTTCTAGCACAACTTTTCGCTCAACATCGGCCAAGACGTGTTAAATCTTTGATATTATCTAATTCGTTTATTGAGACTAAAAGTTTTTCTGCAGCAATGCCATGGGCTCCAATTGTTAGTTGGGCCCCCTCTTTTTTGCTGAAAAGGTATGTCTTAACAGGAATTCGTGATGGTCCGCATGAACCTTTTATCGCCGATTCTGTAGACTTTGTTGTTTCTCAGGTGGAAATGCTTTCTAGAGAAGATTTGGCTTCAAGGCTGACCCTAACAGTTGATGATGCCTCAATTGGACCTCTTCTTCTTCCAGATTCCTCTATTACCATAATGGATACAAATGACTATTGTGCGGTTCCACTGCAACTCAAAGATCAACTGAACGAAAGATATTCTGAAGCCAGAAGAGCATACTTGAAAACAGGGGGCGATTTCCCATTTCTTTCACGCCCTGATGAAGTAAACTTGCATCTTCAGCTGCACTTGAGACGTGTTGGGGTAGAAGCACGGCCAGATTTGGTTCAGGTTATCCCAAAAGCAGATAGTGATAGTGGTCCTAGTGAAAAGAAGGATGAAACAGGTGGTGATGATGATACACACGAGGATGACAATGAACACAATGGAAGTTCACCTTCCGAAAACCAAACACCTCCAGCCCCAGAGAGTCCTGAACCTCATAGTATAGAGGATCGTCTACTTGACAATGCTGAAGCTTGTTATTTGGCTAATGAGATGCTTGTATCTACTCACGGAGAAAATAAAGTGCTCGTGGCAGTATTACTACTACGTTACGTTCAGATGATTTATGTAGGTTGTTTGATGCTAGGCATGAAGGATGCTGGTTCAAGTCACCTGTTGTCATTCATACCGAACAGGTAG 1206 42.95 MGIKGVSSAPGDFIYFKSQVPLHRIPIGTKQWRYYDFGPKVVPPLICLPGIAGTADVYYKQIMFLSMKGYRIISVDIPRVWNHQEWIQAFEKFLDAIDVHRIHLYGTSLGGFLAQLFAQHRPRRVKSLILSNSFIETKSFSAAMPWAPIVSWAPSFLLKRYVLTGIRDGPHEPFIADSVDFVVSQVEMLSREDLASRLTLTVDDASIGPLLLPDSSITIMDTNDYCAVPLQLKDQLNERYSEARRAYLKTGGDFPFLSRPDEVNLHLQLHLRRVGVEARPDLVQVIPKADSDSGPSEKKDETGGDDDTHEDDNEHNGSSPSENQTPPAPESPEPHSIEDRLLDNAEACYLANEMLVSTHGENKVLVAVLLLRYVQMIYVGCLMLGMKDAGSSHLLSFIPNR 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7367169 7373110 + CmaCh15G011620.1 Cma15g01162 310312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01162 401 SUPERFAMILY alpha/beta-Hydrolases 20 267 IPR029058 -
Cma15g01162 401 MobiDBLite consensus disorder prediction 292 317 - -
Cma15g01162 401 MobiDBLite consensus disorder prediction 284 336 - -
Cma15g01162 401 Gene3D alpha/beta hydrolase 14 273 IPR029058 -
Cma15g01162 401 PANTHER ACID CLUSTER PROTEIN 33 5 322 IPR026151 -
Cma15g01162 401 Pfam alpha/beta hydrolase fold 43 138 IPR000073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01162 K19367 SPG21; maspardin - csv:101212583 671.003
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01162 Cma-Chr15:7367169 Cma02g01500 Cma-Chr2:8569469 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g487 . . . . . . . . . . . Cma15g01162 . Car15g01050 . . . . . . . . . . . . . . . . . . . . . . Csa05g00378 Chy09g01134 . . . . . Bpe08g01448 . . . . . Cmo15g01223 . . . . . Cpe13g00211 Bhi12g00377 . . Lac11g2222 Hepe06g1638 . Lcy12g1761 Cla01g00351 Cam01g0367 Cec01g0363 Cco01g0377 Clacu01g0370 Cmu01g0350 Cre09g2160 Lsi09g00378 . . Cme09g01665
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007275 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 4 1 2 2 1 1 1 1 1 3 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01162 Cma_Chr15 FPKM 13.899094 13.868412 15.081405 14.722901 14.594589 16.200834 14.931857 17.111784 16.007336 17.070854