Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01167 ATGGCGTCTACATCGCCGGCGGCTCCGGCGGCTCCGGCTGTGGAGTCTGGGAGTTCCTCTGCGGATGAGGTGACAGCGAAAGTCGTACACAAGCGATATGAAGGACTGGTGACGGTACGGACGAAGGCTATAAAGGGTAAAGGGGCTTGGTATTGGGCACACCTCGAACCCGTTCTCGTCCACTCCACTGACACTGGTTTGCCCAAGGCCGTTAAACTCCGGTGCTCCTTATGCGACGCCGTTTTCTCCGCCTCAAACCCATCTCGGACCGCCTCCGAGCATCTCAAACGCGGCACTTGCCCCAATTTCAACTCCCTCCCTAAACCCATTTCCTCTGTTTCCCCTTCCTCTTATCTAATGCCCACTTCCACTTCTCCGCCTCCTCTTCACCATAACAACCGCAAACGAACCTCCTCCGCCGCCGCTGCAAGCGGTGGCGGAGGTGGAGGGTCTTCATACCAAGTCCCACCTCTTGCAATTGTGGATCCCTCGCGATTCTCTGGCGGCGGTGGGGGAGGTGGGGGTCTGTTGGCGCAGCAGCCGCATTTGATGTTATCTGGAGGGAAGGAGGATTTGGGGGCTCTGGCTATGTTGGAGGACAGTGTAAAGAAGCTGAAGAGTCCAAAAACTTCACCTGGGCCAACGCTAAACAAGACCCAGATTGATTCCGCACTTGAATTTCTCACCGATTGGGTGTTCGAATCCGGCGGCTCTGTCACATTTTCAAGCCTCGAACATCCCAAATTCAAGGCTTTTCTCAATCAAGTTGGAATACCCACAATCCCTCGCCGGGAGTTTAGAATTTCGCGACTGAATTCCAAATTCGAGGAAGCTAAAACAGAGTCCGAAGTTAAAATTCGAGACGCCATGTTTTTCCAGCTCGCCTCCGATGGGTGGAACGACAAAAACTACGCCGTTGTCGGAATCGACAAGCTTGTAAATCTCACCGTGAATCTCCCCAATGGGACAAGCTTGTACCGGCGAGCAGTATTCGTCACTGGCTCTGTTCCTTCCTCGTACGCTCAAGAAATCTTCTTGGAAACCATCGCTGATATCAGTGGCAATGTCGTTCAGCAGTGTGTAGGAATTGTAGCAGACAAATTCAAGGCCAAGGCGCTGAAGAATTTGGAGAATCAACACAACTGGATGGTTAATCTCTCATGTCAGTTCCAGGGATTTTCCAGTTTGGTTAAGGATTTCAGCAAACAGCTCCCATTGTTCAAGACAACGACAGAGAATTGCCTAAAGCTTGCTAATTTCGTTAACTACAAGTCACAGGTTCGTAATTCCTTCAATAAATTTCAGCTGCAAGAATACGGGCATGCGGCTTTGCTCCGAGTGCCACCCCGAGACCACGACAACCTCAAAGTTGGGGCTGTCTTCACATTAATGGAAGACATTCTGAGCTACTCTCGAGCTCTGCAGCTGGTTGTGCTGGATGAGGCATGGAAAAATGGTTCCATGGAGGACCCGATTGGTAGAGAAGTGGGAGAGTTGATTGGGAATGTGGGGTTTTGGAATGAATTGGAGGCCGTTCATAGTTTGGTTAAATTGGTAAGAGAAATGGCTGCTGAGATAGAGACAGAGAGGCCACTGGTTGGGCAATGCCTTGGATTATGGGATGAGCTGAGGGGGAAAGTGAAAGATTGGTGTTCAAAGTATGAGATTGGTGAAGGGGGTGTTGAGAAAGTGATTGAAAAGAGGTTCAAAAAGAACTACCACCCGGCATGGGCGGCGTCGTTTATACTCGATCCCTTGTATTTGATAAGGGAAAGGAGCGGGAAGTACCTGCCACCATTCAAATGCCTGAGCCCGGATCAAGAGAAGGACGTCGATAAGCTCATAACTCGGCTCGTGTCGAGGGAGGAAGCTCACATTGCACTGATGGAGCTAATGAAATGGAGGACAGAAGGGCTTGATCCAGTATATGCAAGAGCTGTACAAATGAAGGAAAGAGACCCTGTTAGTGGGAAGATGAGAGTGGCTAATCCACAAAGCAGTAGGCTTGTTTGGGAAACTTACCTTACAGAATTCAAGTCATTGGGCAAGGTTGCAGTGCGCCTCATATTCCTTCATGCCACTTCCTGTGGCTTCAAATGCAACTGGTCTTTGTTGAGATGGGTGTCTTCTCATTCTCATACTCACCAAAGCCCTGCTGCTATGGACATGGCACACAAGTTGATATTCATTTCGGCTCATTCCAAGCTCGACCGTAGGGACTTTTCCACCGACGAAGACAAGGATGCCGAGCTATTCTCCCTACCCAACGGCGACGACGATCATATGCTTAATCAAGTTTTCGCCGATTCCTCCTCGGTGTAA 2322 50.0 MASTSPAAPAAPAVESGSSSADEVTAKVVHKRYEGLVTVRTKAIKGKGAWYWAHLEPVLVHSTDTGLPKAVKLRCSLCDAVFSASNPSRTASEHLKRGTCPNFNSLPKPISSVSPSSYLMPTSTSPPPLHHNNRKRTSSAAAASGGGGGGSSYQVPPLAIVDPSRFSGGGGGGGGLLAQQPHLMLSGGKEDLGALAMLEDSVKKLKSPKTSPGPTLNKTQIDSALEFLTDWVFESGGSVTFSSLEHPKFKAFLNQVGIPTIPRREFRISRLNSKFEEAKTESEVKIRDAMFFQLASDGWNDKNYAVVGIDKLVNLTVNLPNGTSLYRRAVFVTGSVPSSYAQEIFLETIADISGNVVQQCVGIVADKFKAKALKNLENQHNWMVNLSCQFQGFSSLVKDFSKQLPLFKTTTENCLKLANFVNYKSQVRNSFNKFQLQEYGHAALLRVPPRDHDNLKVGAVFTLMEDILSYSRALQLVVLDEAWKNGSMEDPIGREVGELIGNVGFWNELEAVHSLVKLVREMAAEIETERPLVGQCLGLWDELRGKVKDWCSKYEIGEGGVEKVIEKRFKKNYHPAWAASFILDPLYLIRERSGKYLPPFKCLSPDQEKDVDKLITRLVSREEAHIALMELMKWRTEGLDPVYARAVQMKERDPVSGKMRVANPQSSRLVWETYLTEFKSLGKVAVRLIFLHATSCGFKCNWSLLRWVSSHSHTHQSPAAMDMAHKLIFISAHSKLDRRDFSTDEDKDAELFSLPNGDDDHMLNQVFADSSSV 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7400296 7402617 - CmaCh15G011670.1 Cma15g01167 310317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01167 773 PANTHER OSJNBA0013A04.12 PROTEIN 13 768 - -
Cma15g01167 773 MobiDBLite consensus disorder prediction 114 155 - -
Cma15g01167 773 PANTHER F16P17.2 PROTEIN 13 768 - -
Cma15g01167 773 MobiDBLite consensus disorder prediction 114 140 - -
Cma15g01167 773 SUPERFAMILY Ribonuclease H-like 338 707 IPR012337 -
Cma15g01167 773 MobiDBLite consensus disorder prediction 1 21 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01167 - - - csv:101211194 1281.54
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma15g01167 Cma16g01039 CCT
Cma15g01167 Cma16g01039 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01010 Cma-Chr2:5997925 Cma15g01167 Cma-Chr15:7400296 0 dispersed
Cma15g01167 Cma-Chr15:7400296 Cma15g01382 Cma-Chr15:8655223 0 dispersed
Cma15g01167 Cma-Chr15:7400296 Cma16g01039 Cma-Chr16:7985007 0 wgd
Cma15g01167 Cma-Chr15:7400296 Cma02g01507 Cma-Chr2:8597187 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g477 Blo02g01065 . . . Bpe05g00602 . Bma07g01615 Bma14g00563 . Cmo16g01085 . Cma15g01167 Car02g01269 Car15g01056 . Cpe14g00858 . . . . . . . . . . . . . . . . . . . Lsi07g01349 . Chy09g01140 Cme06g02636 . . Bda07g00519 Bda09g00079 Bpe08g01450 Bpe11g00706 . . . Cmo02g01548 Cmo15g01229 . Cma16g01039 . Car16g00989 . . Bhi12g00575 . . . . . . . . . . . . . . Csa03g00324 Chy06g02000 Cme09g01671
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005683 3 1 1 2 2 1 2 1 1 1 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01167 Cma_Chr15 FPKM 5.332472 4.848023 4.743939 4.957208 20.178816 16.617342 18.124744 0.389417 0.381842 0.399746