Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01168 ATGCTCGCTTCCGAGCTAAAAATATTCTTGAACAAACCTGTAAATGTAAAGCAGGCAACTCAGATTCATGCCCAAATTCTCGTCAATGGGCTTCGAAATCTCGAGTCTTGCTTGGTCCGTCAAATTACTCGTTCTGAGTTCTCTCGCGCCAGAATCGTATCCCGTTATCTCCAACGGATCCTTCGTCATTCGCAAAACCCAGATTCCTTCTCATGGGGCTGCGCCGTTCGGTTCTTTTCCCAGAACGGCCAATTCATGGAAACAATCTCCCATTATGTTCAGATGCAGAGATTGGGACTGCATCCGAGCACCTTTGCTGTATCCTCGACTTTGAGAGCTTGCGGTAGGATTATCTGTAAGTTTGGTGGGAGCTCTGTTCACGCTCAGGTATATAAATTGGGGTTTTGTCGCTGTGTCTATGTGCAAACTGCCCTTGTGGATTTTTACTCAAAATTGGGTGATATGGGTTTTGCTCGGAAGGTGTTTGATGATATGACTGAGAAAAATGTGGTTTCGTGGAATTCTATCTTGTCTGGTTATGTGAAAATTGGAATCTTAGATGACGCTCAGAAAGTGTTCGATGAAATGCCTGTAAAGGATGTCATATCTTGGAATTCGATGTTGACGGGATTCGCCAATTCTGGCAATATGGATCGAGCGTCGTGTTTATTTCAACAACTGGGGGAAAGAAGTTCCGCTTCTTGGAATGCAATGATCAGTGGTTACGTGAACTGTGGAGACATGAAGTCTGCAAGAAACATGTTTGATGAAATGCCTAACAGAAATAATGTTTCCTGGATTACATTGATTGCTGGGTATTCGAAGCTTGGGGAGGTTGGTTCAGCTTGTGAGCTCTTTAATAATATGGGTGAGAAAGAGATTCTCTCTTATAACGCATTGATTGCTTGCTATTCACAAAATGGCATGCCTAACGAAGCATTGAAGTTATTCAACCAAATGCTTCAACCCCATGTGGATATCCAACCCGATGAGATGACTTTTGCTAGCATTATATCTGCTTGTACTCAGCTGGGAAATCTGAATTATGGTGCTTGGATTGAATCGTACATGGAAAAACTTGGGATTGAATTAGATGACCATTTGGCAACTGCATTAGTCGATTTTTATGCGAAATCCGGGAACATCAAAAGGGCCTTTGAACTGTTCAATGATCTGAAAAAGAAGGATTTAGTCTCTTATTCAGCTATGATCTTTGGATGTGGTATAAACGGTAAAGCATTTGAAGCAATCAGGTTATTCGAAGAGATGCTAAGTGTAAACATCTGCCCAAATCTTGTGACATATGCCGGGCTTCTTACATCGTATAACCATGCCGGTTTGGTCGATGAAGGTTACGTTTGTTTCTTGTCCATGAAAGACCATGGACTTGAGCCACTGGCTGATCATTATGGAATCATGGTGGATCTGTTGGGCAGGGCAGGGCGGTTAGAAGAAGCGCATGAGCTTATACAAAGCATGCCAGTGCAGCCAAATGCTGGTGTCTGGGGAGCTTTGCTCCATGCTTGCAGGTTACATAACAATGTTGAGCTCGGGGAGATCGCAGCTCGAAATTGCTCAAAGTTGGTGACCGATACAACCGGATATCGGTCTCTTCTAGCCAACATCTACTCTTCTGTGGAGAGGTGGGATGATGCCAAGAGGCTGAGAAAAGCCATGGGAAATAAAGTATTTGCCAAGATATCTGGGTGTAGTTGGATGGAGCAATCTGAAATCTGA 1737 43.47 MLASELKIFLNKPVNVKQATQIHAQILVNGLRNLESCLVRQITRSEFSRARIVSRYLQRILRHSQNPDSFSWGCAVRFFSQNGQFMETISHYVQMQRLGLHPSTFAVSSTLRACGRIICKFGGSSVHAQVYKLGFCRCVYVQTALVDFYSKLGDMGFARKVFDDMTEKNVVSWNSILSGYVKIGILDDAQKVFDEMPVKDVISWNSMLTGFANSGNMDRASCLFQQLGERSSASWNAMISGYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILSYNALIACYSQNGMPNEALKLFNQMLQPHVDIQPDEMTFASIISACTQLGNLNYGAWIESYMEKLGIELDDHLATALVDFYAKSGNIKRAFELFNDLKKKDLVSYSAMIFGCGINGKAFEAIRLFEEMLSVNICPNLVTYAGLLTSYNHAGLVDEGYVCFLSMKDHGLEPLADHYGIMVDLLGRAGRLEEAHELIQSMPVQPNAGVWGALLHACRLHNNVELGEIAARNCSKLVTDTTGYRSLLANIYSSVERWDDAKRLRKAMGNKVFAKISGCSWMEQSEI 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7409133 7410869 + CmaCh15G011680.1 Cma15g01168 310318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01168 578 Pfam PPR repeat family 294 341 IPR002885 -
Cma15g01168 578 Pfam PPR repeat family 395 441 IPR002885 -
Cma15g01168 578 PANTHER OS08G0162200 PROTEIN 228 575 - -
Cma15g01168 578 PANTHER OS08G0162200 PROTEIN 56 166 - -
Cma15g01168 578 PANTHER OS08G0162200 PROTEIN 166 228 - -
Cma15g01168 578 Pfam PPR repeat 143 170 IPR002885 -
Cma15g01168 578 Pfam PPR repeat 171 199 IPR002885 -
Cma15g01168 578 Pfam PPR repeat 202 229 IPR002885 -
Cma15g01168 578 Pfam PPR repeat 234 262 IPR002885 -
Cma15g01168 578 Pfam PPR repeat 469 493 IPR002885 -
Cma15g01168 578 Pfam PPR repeat 264 293 IPR002885 -
Cma15g01168 578 TIGRFAM PPR: pentatricopeptide repeat domain 264 293 IPR002885 -
Cma15g01168 578 TIGRFAM PPR: pentatricopeptide repeat domain 171 199 IPR002885 -
Cma15g01168 578 TIGRFAM PPR: pentatricopeptide repeat domain 398 431 IPR002885 -
Cma15g01168 578 TIGRFAM PPR: pentatricopeptide repeat domain 296 321 IPR002885 -
Cma15g01168 578 TIGRFAM PPR: pentatricopeptide repeat domain 470 493 IPR002885 -
Cma15g01168 578 TIGRFAM PPR: pentatricopeptide repeat domain 234 261 IPR002885 -
Cma15g01168 578 TIGRFAM PPR: pentatricopeptide repeat domain 141 170 IPR002885 -
Cma15g01168 578 TIGRFAM PPR: pentatricopeptide repeat domain 202 228 IPR002885 -
Cma15g01168 578 TIGRFAM PPR: pentatricopeptide repeat domain 433 465 IPR002885 -
Cma15g01168 578 TIGRFAM PPR: pentatricopeptide repeat domain 370 398 IPR002885 -
Cma15g01168 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Cma15g01168 578 Pfam E motif 512 574 IPR046848 -
Cma15g01168 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Cma15g01168 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Cma15g01168 578 SUPERFAMILY TPR-like 71 264 IPR011990 GO:0005515
Cma15g01168 578 Gene3D Tetratricopeptide repeat domain 293 351 IPR011990 GO:0005515
Cma15g01168 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Cma15g01168 578 PANTHER OS07G0578800 PROTEIN-RELATED 56 166 IPR045215 GO:0003723|GO:0009451
Cma15g01168 578 PANTHER OS07G0578800 PROTEIN-RELATED 228 575 IPR045215 GO:0003723|GO:0009451
Cma15g01168 578 PANTHER OS07G0578800 PROTEIN-RELATED 166 228 IPR045215 GO:0003723|GO:0009451
Cma15g01168 578 Gene3D Tetratricopeptide repeat domain 14 230 IPR011990 GO:0005515
Cma15g01168 578 Gene3D Tetratricopeptide repeat domain 376 578 IPR011990 GO:0005515
Cma15g01168 578 Gene3D Tetratricopeptide repeat domain 231 292 IPR011990 GO:0005515
Cma15g01168 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Cma15g01168 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Cma15g01168 578 SUPERFAMILY TPR-like 273 426 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01168 - - - csv:101219504 1030.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00561 Cma-Chr11:2712073 Cma15g01168 Cma-Chr15:7409133 6.14E-10 dispersed
Cma15g01168 Cma-Chr15:7409133 Cma10g00565 Cma-Chr10:2591943 3.45E-123 dispersed
Cma01g00044 Cma-Chr1:160163 Cma15g01168 Cma-Chr15:7409133 3.72E-13 transposed
Cma15g01168 Cma-Chr15:7409133 Cma06g01140 Cma-Chr6:7677398 1.19E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g473 . . . . . . . Bma14g00564 . . . Cma15g01168 . Car15g01057 . . . . . . . . . . . . . . . . . . . . . . Csa05g00369 Chy09g01141 . Blo03g00389 . Bda07g00518 . . Bpe11g00705 . . . . Cmo15g01230 . . . . . . Bhi12g00368 . . Lac11g2208 Hepe06g1629 . . Cla01g00344 . . . . . . . . . Cme09g01672
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010341 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01168 Cma_Chr15 FPKM 0.130109 0.60478 1.231296 1.184952 2.022744 2.241605 1.85343 1.425468 1.368874 1.756357