Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01169 ATGACGGCACGGTCGGCTAGAACTGTCAACTACTTCCGCTTTCCCTTCCCGCAAACTTCAACTTCCACTCACATTCGCCTCACAAACCCACCGGAACCAGTTACACCGCCGCGATTAATGTCGAGCAGCAGTTTCCGTCGGAGAATTCCTGCTATTTCTCGTCTGACTAACAAGTCGTGCCGGAATCTCTCTCCGTCTCCCCACCGGAAAACTCCCCCGATGAATCGCGCTCCTTCTCTGTCCTCCAAGTTATCCAGATGCTCATCGGATCCCCAATTTTGGACCGTCGCCGCCGCCAGTGGAGATGATCGGAATATGACGTCCGAGAAGGAAGGGGAAGAGGTTATTATTTTCCGTCCTCATACGTTTTCGGAAGCCTTTGCTTCATCCCCTCTGTTGATTCCTTCCCCCGCTCAAATCGTCGAGGGCTACAAGAAAGACGCCAAGGTAGTGATCAATGTGACTGTTGAAGGGAGCCCAGGGCCAGTACGAGCCATGGTTAAACTGGGATCCAGTGTGGAGGAGACGATCAAGCTTGTTGTTGCTAAATATAGTGAAGAAGGAAGGACTCCAAAACTTGAACGAGATTCAGCATCTTCCTATGAATTGCATCACTCATATTTCAGCCTCCGGAGTCTTGACAGGGCAGAAATAATTGGGGAAATTGGTAGCAGAAGCTTCTATCTTCGAACCAGCAATAGCTCTCATGCCAAAAATGGCGGAGAATCAGCTGGCTGCACTCAAGAGATTACCAAAGAAACCATAATTGCTTCACCAATTCCTCCTGGGTTCTTGCTTTCTAGCTTCATTGCCAGGAAAATGGGCAAAATTGGATTAGGCTCCGGCGGGGTTCACTGTGAACGGTTTTCTTTTATAATTCCTTCACCGCCTCCTTCAATCCATTTCCGCTTCCGCAGGCGCATGTGGACCGGGAGAGCAACGAGACACGGGCAGTTGGTTGAGGGTATTAATATGGCTGATATCTATGTCTGGCTCCTCTCCTTCTTCATTATCATTGCGCTTCTTATACTCGTCGTTTTCCAGCTAATGTGCTTAGCTGATCTTGAGTTTGATTATATCAACCCATATGACTCCTCATCACGGATAAACAAAGTTGTTTTGCCCGAGTTCATCACTCAAGGAGTCTTGTGTTTCTTCTATCTCTTAACAGGGCATTGGATTATGTCATTGTTTTGTGTTCCCTACCTCTATTATAATATAAGATTGTACACTCAGCGAAAGCACCTGGTAGATGTTACTGAGATATTTAATCAGTTAGCTTGGGAAAAAAAGCAAAGACTTTTCAAACTCGTCTATCTTGTTTCTCTCATCTTCCTCTCCATATTTTGGTTAATTTACAGTGCGTTGGAGGATCACGAGTCTTGA 1386 46.39 MTARSARTVNYFRFPFPQTSTSTHIRLTNPPEPVTPPRLMSSSSFRRRIPAISRLTNKSCRNLSPSPHRKTPPMNRAPSLSSKLSRCSSDPQFWTVAAASGDDRNMTSEKEGEEVIIFRPHTFSEAFASSPLLIPSPAQIVEGYKKDAKVVINVTVEGSPGPVRAMVKLGSSVEETIKLVVAKYSEEGRTPKLERDSASSYELHHSYFSLRSLDRAEIIGEIGSRSFYLRTSNSSHAKNGGESAGCTQEITKETIIASPIPPGFLLSSFIARKMGKIGLGSGGVHCERFSFIIPSPPPSIHFRFRRRMWTGRATRHGQLVEGINMADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVLPEFITQGVLCFFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLAWEKKQRLFKLVYLVSLIFLSIFWLIYSALEDHES 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7411498 7416500 + CmaCh15G011690.1 Cma15g01169 310319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01169 461 PANTHER BNAC05G50380D PROTEIN 42 278 IPR040358 -
Cma15g01169 461 PANTHER BNAA02G21500D PROTEIN 42 278 - -
Cma15g01169 461 SMART Cornichon_2 328 449 IPR003377 GO:0016192
Cma15g01169 461 MobiDBLite consensus disorder prediction 58 86 - -
Cma15g01169 461 MobiDBLite consensus disorder prediction 22 41 - -
Cma15g01169 461 Pfam Cornichon protein 330 449 IPR003377 GO:0016192
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01169 K20368 CNIH, ERV14; protein cornichon - bhj:120067730 328.176
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma15g01169 Cma16g01037 CCT
Cma06g00748 Cma15g01169 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01352 Cma-Chr2:7894696 Cma15g01169 Cma-Chr15:7411498 2.81E-14 dispersed
Cma03g00082 Cma-Chr3:832875 Cma15g01169 Cma-Chr15:7411498 7.83E-35 dispersed
Cma07g01305 Cma-Chr7:7395736 Cma15g01169 Cma-Chr15:7411498 2.65E-34 dispersed
Cma15g01169 Cma-Chr15:7411498 Cma20g00551 Cma-Chr20:2674960 5.16E-14 dispersed
Cma15g01169 Cma-Chr15:7411498 Cma16g01037 Cma-Chr16:7963838 8.72E-77 wgd
Cma15g01169 Cma-Chr15:7411498 Cma02g01508 Cma-Chr2:8603954 2.62E-91 wgd
Cma15g01169 Cma-Chr15:7411498 Cma06g00748 Cma-Chr6:3788610 8.20E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g471 . . . Bda08g00554 Bpe05g00605 . . Bma14g00566 Cmo06g00772 Cmo16g01083 . Cma15g01169 . Car15g01059 . Cpe14g00856 . . . . . . . . Cla10g00304 Cam10g0318 Cec10g0329 Cco10g0321 Clacu10g0315 Cmu10g1154 Cre10g0564 . . . Cone9ag0723 Lsi07g01352 Csa05g00367 . Cme06g02638 . . Bda07g00516 . . Bpe11g00703 Bma05g00784 Bma12g00131 . . Cmo15g01232 Cma06g00748 Cma16g01037 Car06g00670 Car16g00987 Cpe08g00770 Cpe13g00202 . . . . . . . Cla01g00343 Cam01g0356 Cec01g0353 Cco01g0366 Clacu01g0360 Cmu01g0340 Cre09g2169 . Csa03g00326 Chy06g01998 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000365 6 3 2 4 3 4 6 4 3 2 4 4 6 3 4 6 4 3 7 4 3 2 3 5 5 2 4 9 10 3 128
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01169 Cma_Chr15 FPKM 9.98589 9.12826 9.581111 10.361887 5.439913 4.871184 6.274456 4.983433 5.429216 5.870918