Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01171 ATGGCCCAGCTAACTCCAAGTATGGCCATCTACGACACAATGCAGAGCTTGCAGAGTCCTGTAGCTACCCATTGCGTGGGTTATGCCTATAATCTGGCAGCCTTTCTTTTAGCAGCTGGAGAAAAGGGTAACCGCTCTGCCATGCCTCTATCAAGAATTGCTTTGCAACCCCCTTCCGGAGCTGCACGTGGCCAGGCTGATGACATTCGAAATGAAGCAAATGAGCTCTTGAGAATCATGGATTATCTTTAA 252 48.41 MAQLTPSMAIYDTMQSLQSPVATHCVGYAYNLAAFLLAAGEKGNRSAMPLSRIALQPPSGAARGQADDIRNEANELLRIMDYL 83
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7422344 7423232 + CmaCh15G011710.1 Cma15g01171 310321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01171 83 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 2, CHLOROPLASTIC 3 83 - -
Cma15g01171 83 CDD S14_ClpP_2 5 83 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cma15g01171 83 Gene3D - 1 83 - -
Cma15g01171 83 Pfam Clp protease 4 81 IPR023562 -
Cma15g01171 83 PRINTS Clp protease catalytic subunit P signature 23 40 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cma15g01171 83 PRINTS Clp protease catalytic subunit P signature 44 63 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cma15g01171 83 SUPERFAMILY ClpP/crotonase 5 82 IPR029045 -
Cma15g01171 83 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 3 83 IPR023562 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01171 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - fve:101303902 141.739
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma15g01171 Cma16g01147 CCT
Cma02g01509 Cma15g01171 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01171 Cma-Chr15:7422344 Cma01g00251 Cma-Chr1:1155200 8.89E-19 dispersed
Cma15g01171 Cma-Chr15:7422344 Cma02g01509 Cma-Chr2:8605657 2.54E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g469 . . Bda06g00053 . . Bpe07g00146 . . . Cmo16g01198 Cma02g01509 Cma15g01171 . Car15g01060 . Cpe14g00951 . . . . . . . . . . . . . . . Cone8ag0358 Cone12ag0350 . . . Csa05g00366 Chy09g01142 . . . . . . . . Bma12g00130 . . Cmo15g01233 . Cma16g01147 . Car16g01144 . . Bhi12g00364 . . . . . . . . . . . . . Lsi09g00370 . . Cme09g01674
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0044276 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01171 Cma_Chr15 FPKM 4.087302 3.296145 3.981941 5.120412 7.888185 8.884361 10.629412 11.5554 10.002308 11.991579