Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01173 ATGGAGGGAAGGGACGGTGGTGCAAGTAGTGGGGTTACTGTAGTTGGATCAGATGCTCCGTCCAAGTACCAAATAGCACCCAGGACCTCCGATAGCCCGCCGCAGACCGGTGGATCAACGCTGCCACCGGCGACTCAACCAACTTCCACGCCGTCGGCCTCGGCGCAGGTACCTGCGCAGCCTACGCCACCCACGGCGGCCTCCTCTGTTCCGGGAAAGAAGAAAAGAGGGAGGCCGAGAAAATATGGACCCGATGGCTCTGTTAATATGGCTCTGTCTCCCAAGCCGATATCGTCATCGGTGCCGCCGCCGGTGATTGACTTCTCGGCGGAGAAGAGGGGGAAAGTCCGGCCGGCGAGCGGTGTGAGCAAAACCAAATTCGAAGTGGATAATTTAGGCGACTGGGTGGTTCCATGTTCTGTTGGTGCAAATTTTACGCCTCATATCATCACTGTCGATGCGGGCGAGGATGTTACGATGAAGATAATATCATTTTCTCAACAAGGACCTCGAGCGATATGCGTTTTATCTGCTAATGGTGTGATCTCGAGTGTCACTCTTCGTCAGCCTGATTCGTCTGGAGGAACATTAACATATGAGGGTCGATTTGAAATACTATCCTTATCTGGCTCGTTCATGCCGAGCGACAATGGAGGAACTAGAAGTAGATCGGGTGGAATGAGTGTTTCCTTAGCAAGTCCAGACGGGCGTGTCGTAGGCGGTGGAGTTGCTGGTCTATTAGTAGCTGCAAGTCCTGTTCAGGTTGTAGTAGGGAGTTTTCTTTCTGGAAACCAACATGAGCAGAAACCTAAAAAGCCAAAACAAGATACTAATTCAACTGCTCCGCCAACTGCTGCCATTCCAATATCTTGCGTCGACCCTAAGTCGAACCTCTCACCGTCCAGTCCCTTTCGTGGCGATAACTGGTCGACGCTGCCAACCGATTCGAGGAATAATAAGCCAACTGATATCAATGTATCCCTACCCAGTGCTTGA 996 51.81 MEGRDGGASSGVTVVGSDAPSKYQIAPRTSDSPPQTGGSTLPPATQPTSTPSASAQVPAQPTPPTAASSVPGKKKRGRPRKYGPDGSVNMALSPKPISSSVPPPVIDFSAEKRGKVRPASGVSKTKFEVDNLGDWVVPCSVGANFTPHIITVDAGEDVTMKIISFSQQGPRAICVLSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKKPKQDTNSTAPPTAAIPISCVDPKSNLSPSSPFRGDNWSTLPTDSRNNKPTDINVSLPSA 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7425014 7427457 - CmaCh15G011730.1 Cma15g01173 310323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01173 331 SUPERFAMILY AF0104/ALDC/Ptd012-like 144 264 - -
Cma15g01173 331 Gene3D - 147 277 - -
Cma15g01173 331 CDD DUF296 146 237 IPR005175 -
Cma15g01173 331 ProSiteProfiles PPC domain profile profile. 142 283 IPR005175 -
Cma15g01173 331 MobiDBLite consensus disorder prediction 262 331 - -
Cma15g01173 331 Pfam Plants and Prokaryotes Conserved (PCC) domain 147 260 IPR005175 -
Cma15g01173 331 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 9 329 - -
Cma15g01173 331 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 329 IPR039605 GO:0003680
Cma15g01173 331 MobiDBLite consensus disorder prediction 1 103 - -
Cma15g01173 331 MobiDBLite consensus disorder prediction 294 331 - -
Cma15g01173 331 MobiDBLite consensus disorder prediction 23 67 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01133 Cma15g01173 CCT
Cma15g01173 Cma16g01035 CCT
Cma06g01133 Cma15g01173 ECH
Cma15g01173 Cma16g01035 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01173 Cma-Chr15:7425014 Cma18g01194 Cma-Chr18:9477137 3.27E-86 dispersed
Cma14g01978 Cma-Chr14:13908339 Cma15g01173 Cma-Chr15:7425014 1.83E-87 wgd
Cma15g01173 Cma-Chr15:7425014 Cma16g01035 Cma-Chr16:7958211 9.35E-124 wgd
Cma15g01173 Cma-Chr15:7425014 Cma02g01510 Cma-Chr2:8610196 0 wgd
Cma15g01173 Cma-Chr15:7425014 Cma06g00747 Cma-Chr6:3781325 4.05E-111 wgd
Cma15g01173 Cma-Chr15:7425014 Cma06g01133 Cma-Chr6:7636265 3.99E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01173 - - csv:101210208 519.235