Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01175 ATGGATGCCCACTCCCTTCCTCCTCCCTTCCACACTCGAGATTTCCATCTCCAGACTCCGTTTCACCATAACAACAACAACCACAACAACAACAATTCCGAAGAGGAACATAGCGCCACCACCAGCCGTCTCAAGCGTGATCGCGACGACGACCATCACCCCAACAACTCCGCCCCCAACAGTGGTGGAGATCCCGACGGAGAAATCACGCGTCGCCCTAGAGGCAGACCTGCTGGATCCAAAAACAAACCCAAACCCCCCATTATCATTACTCGCGACAGTGCCAACGCCCTTCGGACCCATGTCATCGAGGTCACCGATGGCTGCGACATCGTCGACAGTGTTGCTACCTTCGCTCGCCGCCGACAGCGCGGCGTTTGTATCATGAGCGGTACCGGCACCGTTACCAACGTCACTCTCCGCCAACCCGCATCCCCCGGTGCAATTGTCAACTTACACGGTCGTTTCGAGATCTTGTCCCTTGCCGGGTCTTTCCTCCCTCCTCCAGCTCCTCCTGCCGCTACCACCTTGACCATTTACCTCGCCGGCGGCCAGGGCCAAGTCGTCGGCGGTAGCGTCGTGGGTACTTTAATCGCTTCCGGCCCTGTCGTCATCATGGCTGCCTCGTTTAGTAACGCCGCTTATGAACGGCTCCCGTTGGAGGAGGACGACCAGCCGCCACTTCCGTCGATGCAGGGCGGCGGCGGAATTGGGTCTCCCGATGAAATTGGACAGCCCCAACAACAGCAGCAACTCGTCGGCGACGGAAATGGGCCGTTGTTTCAAGGTTTGCCTCCGAATCTGCTAAATTCAATTCAAATGCCACCATCGGAAGCAGCTTATTGGGCAAATTCGCGTCCTCCGTACTAA 870 57.36 MDAHSLPPPFHTRDFHLQTPFHHNNNNHNNNNSEEEHSATTSRLKRDRDDDHHPNNSAPNSGGDPDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEEDDQPPLPSMQGGGGIGSPDEIGQPQQQQQLVGDGNGPLFQGLPPNLLNSIQMPPSEAAYWANSRPPY 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7443541 7444410 + CmaCh15G011750.1 Cma15g01175 310325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01175 289 MobiDBLite consensus disorder prediction 19 37 - -
Cma15g01175 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 289 IPR014476 GO:0003680
Cma15g01175 289 MobiDBLite consensus disorder prediction 221 269 - -
Cma15g01175 289 CDD DUF296 99 165 IPR005175 -
Cma15g01175 289 MobiDBLite consensus disorder prediction 242 256 - -
Cma15g01175 289 MobiDBLite consensus disorder prediction 38 55 - -
Cma15g01175 289 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 226 - -
Cma15g01175 289 PIRSF ESCAROLA 11 289 IPR014476 GO:0003680
Cma15g01175 289 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 212 IPR005175 -
Cma15g01175 289 ProSiteProfiles PPC domain profile profile. 95 231 IPR005175 -
Cma15g01175 289 MobiDBLite consensus disorder prediction 1 90 - -
Cma15g01175 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 3 289 - -
Cma15g01175 289 Gene3D - 98 228 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01130 Cma15g01175 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00950 Cma-Chr8:5922784 Cma15g01175 Cma-Chr15:7443541 2.88E-79 dispersed
Cma15g01175 Cma-Chr15:7443541 Cma17g00027 Cma-Chr17:116958 1.02E-84 dispersed
Cma15g01175 Cma-Chr15:7443541 Cma02g01513 Cma-Chr2:8630962 1.56E-151 wgd
Cma15g01175 Cma-Chr15:7443541 Cma06g01130 Cma-Chr6:7608057 8.55E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01175 - - csv:101209716 454.136