Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01176 ATGGCCGCTTCTGGGGGTACTAGTTATAGAAATGGCGCCAATTCCAGAAACTCTCTTAAGTTCGATAAGCCCTTTTCTCCTAATTCCAACCCCAATTCTTCTCTTAAGTCAAAGTCTCTTCCCAATTCTACTCTGGGACGCAGTAGCCCTGCATCTCTTGGAGCTGCCAAGAATGACGGTGGAGTTCCTGGAAGAGTTCGAGTGGCTGTTAGATTGCGACCACGCAATTCAGAAGAATTGATAGCCGATGCTGATTTTGCTGATTGCGTAGAATTACAGCCAGAGCTTAAAAGGTTGAAACTCCTGAAGAACAACTGGGATTCAGATACGTATGAGTTTGATGAAGTGCTAACTGAGTTTGCTTCTCAAAAACGTGTTTATGAAGCCGTGGTGAAACCTGTTGTGGAGAGTGTATTGGATGGCTACAATGGAACAATTATGGCATATGGACAGACTGGTACTGGTAAAACGTATACTCTTGGACGACTTGGAGAGGAAGACACGGCTGATCGTGGAATAATGGTGCGTGCTATGGAGGACATCTTGGCTGAAGTTTCTTTGGAGATGGATTCTGTCTCGGTATCCTACCTGCAGCTTTATATGGAGAGCATACAGGACCTTCTTGACCCTGCAAATGATAACATTTCCATTGTTGAAGATCCTAAAACGGGAGATGTTTCGTTACCTGGGGCTAGCCTTGTAGAAATTAGACACCAGGAGAGCTTTGTGGAACTACTAAGATTGGGGGAAGCTCATCGTTTTGCTGCGAATACGAAACTAAACACCGAATCTTCTCGTAGTCATGCAATTCTCATGGTACATGTAAAGCGGTCTTTGAAGGGAAGGGATTCAACTCTGGGAAGTGATATTGGTGGGCATTCTCATTTGGTTAAGACCTTGAAAGCTCCTATTGTTCGGAAGGGAAAGTTAGTGGTGGTGGATCTTGCTGGTTCTGAGCGCATTGACAAGTCAGGAAGTGAAGGACATACACTTGAAGAAGCCAAATCCATAAATCTCTCCCTGAGTGCATTAGGGAAATGCATAAATGCACTAGCTGAGAATAGTGCACACGTTCCAGTCAGGGATTCAAAGCTTACAAGATTACTCCGGGATTCATTTGGTGGAACAGCTAGAACTTCACTGGTTATTACTATTGGTCCTTCACCTCGCCATCGTGGAGAGACTACAAGCACAATAATGTTTGGCCAACGGGCTATGAAGGTGGAAAATATGGTGAAGATAAAAGAAGAATTTGATTATAAAAGTTTATCGAGAAGATTAGACATTCAATTAGACAAACTGATAGCCGAACATGAAAGACAGAAGAAATCATTTGAGATGGAAATTGAAAGAATTACCAAAGAAGCAGAGGATCGCATATCTGAAGCTGAAAGAAGTCATTCGAATGCACTGGAGGGTTCGGTTGAGTGTGCCGATAAGGAAGTTGAGGAGCTAAAGAATTTGGTTAAAAGGGAAACGCTTTTGAGGAAGGCAGCTGAAGAGGAAGTTGACAATCTTAGAACTCAAGTAGCCCAACTGAAGAGATCAGAGACATCTTGCAATTTAGAAATCTCTAGGCTTTGCAAGTCTCTGGAAGATGAGCAAAATAAGAAAAAGAAACTAGAAGGAGATATAGCTGTTCTACAAACCCAGTTGTTGCAATTGAGCTTTGAAGCTGATGAGACCAGTAGGCGACTGGACAGAGGTGAGCCTGGGAAAGTCCTCGGTTCTATAGATTCTCAAGTGCAACAAGTTAAGCACTCACTGGCTCAGGAGCCTGGAAATGGGGAGAAAGCTTCAGTTGCCAAACTCTTTGAGCAAGTGGGACTGCAGAAGATCTTGTCGTTGCTGGAAGCTGAAGATTATGACGTCAGAATTCATGCTGTGAAAGTGGTTGCAAATCTAGCAGCTGAAGAAACAAATCAGCAAAAGATTGTAGAGGCTGGCGGCCTTTCATCCTTGCTGATGCTACTCAGAAACACAGAGGATGAGACGATACACAGAGTTGCTGCTGGGGCAATTGCAAATCTGGCAATGAATGAGACCAACCAAGAGCTTATTATGTCCCAAGGGGGCATTAGCTTACTGTCCATGACGGCTGCCAACGCTGAGGATTCCCAAACCCTTCGTATGGTTGCCGGAGCAATCGCCAATTTGTGCGGCAATGATAAGTTACAGAAGAAGTTAAGGGGCGAAGGTGGCATCAAGGCATTGCTTGGTATGGTAAGATGCAGACATCCTGATGTTCTTGCACAAGTTGCCAGAGGAATTGCGAATTTCGCAAAGTGCGAGTCGAGGGCCTCTATACAAGGGAGCAAGGCTGGAAAGTCTTTCTTGATTGAAGATGGAGCACTCCCATGGATTGTACAGAATGCCAACAATGAAGCATCGACGATCAAACGACATATTGAACTGGCACTCTGTCATTTAGCACAACATGAAGTGAACGCAAGGGACATGATGAATGGAGGTGCAGTGTGGGAACTGGTTCGGATATCGCGGGACTGCTCACGGGAAGACATAAGGAGTCTTGCGCATCGAACGTTAATATCCAGCCCCACATTTCAAGCTGAAATGAGACGACTACGAATAGATTATTGA 2601 44.48 MAASGGTSYRNGANSRNSLKFDKPFSPNSNPNSSLKSKSLPNSTLGRSSPASLGAAKNDGGVPGRVRVAVRLRPRNSEELIADADFADCVELQPELKRLKLLKNNWDSDTYEFDEVLTEFASQKRVYEAVVKPVVESVLDGYNGTIMAYGQTGTGKTYTLGRLGEEDTADRGIMVRAMEDILAEVSLEMDSVSVSYLQLYMESIQDLLDPANDNISIVEDPKTGDVSLPGASLVEIRHQESFVELLRLGEAHRFAANTKLNTESSRSHAILMVHVKRSLKGRDSTLGSDIGGHSHLVKTLKAPIVRKGKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINALAENSAHVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETTSTIMFGQRAMKVENMVKIKEEFDYKSLSRRLDIQLDKLIAEHERQKKSFEMEIERITKEAEDRISEAERSHSNALEGSVECADKEVEELKNLVKRETLLRKAAEEEVDNLRTQVAQLKRSETSCNLEISRLCKSLEDEQNKKKKLEGDIAVLQTQLLQLSFEADETSRRLDRGEPGKVLGSIDSQVQQVKHSLAQEPGNGEKASVAKLFEQVGLQKILSLLEAEDYDVRIHAVKVVANLAAEETNQQKIVEAGGLSSLLMLLRNTEDETIHRVAAGAIANLAMNETNQELIMSQGGISLLSMTAANAEDSQTLRMVAGAIANLCGNDKLQKKLRGEGGIKALLGMVRCRHPDVLAQVARGIANFAKCESRASIQGSKAGKSFLIEDGALPWIVQNANNEASTIKRHIELALCHLAQHEVNARDMMNGGAVWELVRISRDCSREDIRSLAHRTLISSPTFQAEMRRLRIDY 866
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7445105 7453900 - CmaCh15G011760.1 Cma15g01176 310326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01176 866 Gene3D Kinesin motor domain 58 433 IPR036961 -
Cma15g01176 866 SMART kinesin_4 63 416 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma15g01176 866 PANTHER KINESIN-RELATED 48 473 IPR027640 GO:0003777|GO:0007018
Cma15g01176 866 PANTHER KINESIN-RELATED 480 858 IPR027640 GO:0003777|GO:0007018
Cma15g01176 866 ProSiteProfiles Kinesin motor domain profile. 65 408 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma15g01176 866 Coils Coil 524 551 - -
Cma15g01176 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 446 IPR027417 -
Cma15g01176 866 MobiDBLite consensus disorder prediction 1 60 - -
Cma15g01176 866 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 649 692 IPR000225 GO:0005515
Cma15g01176 866 CDD KISc 65 406 - -
Cma15g01176 866 Coils Coil 435 466 - -
Cma15g01176 866 MobiDBLite consensus disorder prediction 1 51 - -
Cma15g01176 866 PANTHER KINESIN-LIKE PROTEIN KIN-UA 48 473 IPR033291 GO:0008017|GO:0032886|GO:0048364
Cma15g01176 866 PANTHER KINESIN-LIKE PROTEIN KIN-UA 480 858 IPR033291 GO:0008017|GO:0032886|GO:0048364
Cma15g01176 866 Gene3D - 434 851 IPR011989 -
Cma15g01176 866 SMART arm_5 638 679 IPR000225 GO:0005515
Cma15g01176 866 SMART arm_5 680 721 IPR000225 GO:0005515
Cma15g01176 866 SMART arm_5 722 762 IPR000225 GO:0005515
Cma15g01176 866 SMART arm_5 598 637 IPR000225 GO:0005515
Cma15g01176 866 Pfam Kinesin motor domain 71 408 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma15g01176 866 Coils Coil 468 516 - -
Cma15g01176 866 ProSitePatterns Kinesin motor domain signature. 308 319 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cma15g01176 866 PRINTS Kinesin heavy chain signature 141 162 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma15g01176 866 PRINTS Kinesin heavy chain signature 309 327 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma15g01176 866 PRINTS Kinesin heavy chain signature 358 379 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma15g01176 866 Pfam Armadillo/beta-catenin-like repeat 641 678 IPR000225 GO:0005515
Cma15g01176 866 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 608 650 IPR000225 GO:0005515
Cma15g01176 866 SUPERFAMILY ARM repeat 600 849 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01176 - - K10396 csv:101209471 1465.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00507 Cma-Chr15:2314135 Cma15g01176 Cma-Chr15:7445105 5.49E-95 dispersed
Cma15g01176 Cma-Chr15:7445105 Cma01g00575 Cma-Chr1:2984984 7.21E-61 dispersed
Cma14g01984 Cma-Chr14:13939565 Cma15g01176 Cma-Chr15:7445105 0 wgd
Cma15g01176 Cma-Chr15:7445105 Cma02g01514 Cma-Chr2:8633534 0 wgd
Cma15g01176 Cma-Chr15:7445105 Cma06g01129 Cma-Chr6:7594601 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g464 . . . . . . . . . . . Cma15g01176 . Car15g01064 . . . . . . . . . . . . . . . . . Cone8ag0352 . . . . . Chy09g01147 . . . . . . . . . . . Cmo15g01237 . . Car06g00966 . . . Bhi12g00358 . . . . . . . . . . . . . . . . Cme09g01679
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001054 3 5 3 2 3 2 5 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 3 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01176 Cma_Chr15 FPKM 3.282915 3.558961 1.972054 2.143323 13.575164 14.191371 13.800817 1.593762 1.48236 1.272204