Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01179 ATGACCCAGAATCGATTATTCCGGACGCGTAATTCTAAACCTGACGAAGAAGCAGAATCCGCCACAAGCTGTGGTGGAAGAGCCGCCATGAGAGTCGTAGTACCTCTGCAAAGCGTCGTTCAAGGAAGAGGCGGTGTTGTTTTGGGCTCTGTTATACCGTGCGTTCTTTTCTACTTTCTTCAACTCTACTTGAAACGAAATCGGTCAGACCAGACCCGGGACTCGCCGCCGTCGCCGGATGCGGATTCTTCGGGGAACTCATCGCTGTCGTCGAGTAATCAGTTAGTGGAGCTCACTGTGCTGCCTCGAACATTGTCTCGGACCTTCCTCTCGCCGAGGTCGAGCGGGCATGTTTGCGTTTCGGGTCGGGCTAATTCGATTGCTAGAATTGGGGATTCTTCGATTTTCGTTGGAATGAGGAGGTTCTTGGAGGACTCATTTGACGAATTCGATAATCCGACAGGGATTATTCAGCTATCTGTTGCTGAGAATAAGTTATCCTCCGACTTGGTGCAAAATTGGCTGACGGAGAATGGAAGGGATGCTATATTTGGAGGAGGGAATCATAATGAGCTGAGTGTAGCAGGGACTGTTAGTTACCAGCCTTCAGATGGATTGCCGGATTTGAAACTGGCTGTGGCAAGTTTCATGTCTCAAGTTGTAGGGAACTCTGTCTCATTCATCCCTTCACAATTAGTATTAACAACTGGAGTGACCTCTGCAATTGAAACACTTTGCTTTTGCATAGCTGACCCAGGACAAGCGTTTCTCGTTCCAACGCCATATTACCCGGGTCTTGACAACGATGTAAAGTGTCGAACTGGGGTGGAGATCGTACCAGTTCCATGCTGCAGTGCCGATAACTTCAGTTTAAGCACAACTTCTCTTGATCGAGCGTTCCACCAGGCAAGGAATCGCGGCCTTAAAGTTCGTGGAATTATAATCTCAAATCCTTCAATTCCAGTTGGAAACCAGCTACAAAGAGAAACACTCTACAACCTTTTGGAGTTTGCTAGGGAGAAAAACATCCATATAATATCAAATGAAATACTTGTAGGATCAACTTATGGAAGTGAAGAATTCGTGAGCATGGCTGAAATGATCGACTTAGACGATAGCGATCAAGACAGAGTACATATTACATATGATCTATCTGTAGACATGTCACTTCCTGGTTTCAGAGTTGCTGCAATCTACTCTTCGAACGAAAATATCCTGGCTGCTGGTAGAAAACTGGCAAGGTTCTCATCTGTTTCTTCCATAACCCAGAACCTCCTTTCTTCTATGCTCTCAGATAAGCAATTCATCCAGAGGTTCATTCGGATCAGTCGAGAGAGGCTTGGAGAAATGAATCGTAAATTTGCTGCAGGCCTGAAGGAACTCGACATCAAATGTATCAAGAGCAATGGAGGTTTCTACTGCTGGGCAGATATGAGCAAGCTAATCGGCTCGTACAGCGAGAAAGCCGAACTTGAGCTCTGGGAAAAGCTGTTGGATATAGGTAAAGTTAATCTTACCCCTGGCTCTAGCTGTAGTTGTGTTGAACCAGGATGGTTTGGATTCTGTTTTACAACTTTGATTGATAAAGAAATACCTATCATTATGGACCGAATTCGAAAAATTTCCGAAGCATGTAAATCTTATACTTGA 1650 45.09 MTQNRLFRTRNSKPDEEAESATSCGGRAAMRVVVPLQSVVQGRGGVVLGSVIPCVLFYFLQLYLKRNRSDQTRDSPPSPDADSSGNSSLSSSNQLVELTVLPRTLSRTFLSPRSSGHVCVSGRANSIARIGDSSIFVGMRRFLEDSFDEFDNPTGIIQLSVAENKLSSDLVQNWLTENGRDAIFGGGNHNELSVAGTVSYQPSDGLPDLKLAVASFMSQVVGNSVSFIPSQLVLTTGVTSAIETLCFCIADPGQAFLVPTPYYPGLDNDVKCRTGVEIVPVPCCSADNFSLSTTSLDRAFHQARNRGLKVRGIIISNPSIPVGNQLQRETLYNLLEFAREKNIHIISNEILVGSTYGSEEFVSMAEMIDLDDSDQDRVHITYDLSVDMSLPGFRVAAIYSSNENILAAGRKLARFSSVSSITQNLLSSMLSDKQFIQRFIRISRERLGEMNRKFAAGLKELDIKCIKSNGGFYCWADMSKLIGSYSEKAELELWEKLLDIGKVNLTPGSSCSCVEPGWFGFCFTTLIDKEIPIIMDRIRKISEACKSYT 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7462460 7465739 - CmaCh15G011790.1 Cma15g01179 310329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01179 549 MobiDBLite consensus disorder prediction 76 92 - -
Cma15g01179 549 Pfam Aminotransferase class I and II 163 538 IPR004839 GO:0009058|GO:0030170
Cma15g01179 549 PANTHER AMINOTRANSFERASE ACS12-RELATED 20 545 - -
Cma15g01179 549 MobiDBLite consensus disorder prediction 69 92 - -
Cma15g01179 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 159 185 - -
Cma15g01179 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 194 210 - -
Cma15g01179 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 231 251 - -
Cma15g01179 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 253 274 - -
Cma15g01179 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 307 331 - -
Cma15g01179 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 343 366 - -
Cma15g01179 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 377 401 - -
Cma15g01179 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 409 432 - -
Cma15g01179 549 Gene3D - 179 432 IPR015421 GO:0003824
Cma15g01179 549 SUPERFAMILY PLP-dependent transferases 132 541 IPR015424 -
Cma15g01179 549 Gene3D Aspartate Aminotransferase, domain 1 145 537 IPR015422 GO:0003824
Cma15g01179 549 MobiDBLite consensus disorder prediction 1 23 - -
Cma15g01179 549 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 20 545 - -
Cma15g01179 549 CDD AAT_like 195 540 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma15g01179 Cma18g01197 CCT
Cma15g01179 Cma18g01197 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01179 Cma-Chr15:7462460 Cma18g01197 Cma-Chr18:9499886 0 dispersed
Cma15g01179 Cma-Chr15:7462460 Cma02g01517 Cma-Chr2:8650601 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01179 K14270 - csv:101208573 929.087