Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01184 ATGGAATTCAATATTGAATCCCCATTTTCATTTGAGTTTGGAGATGAACTATTCCCTCTCCCCCCCATCTCTCCCTTAGAGAATACGAACATTGCGTCCAAAAAGCCCAAAACATGCAGCCGGAGACAGCCGCCGCCCAACACTTCCAACGACGAGAACCCCAACGAACAAAAGAGGAAGAAGATTATGCATAGAGATGTGGAGCGCCAAAGGAGACAGGAAATGTCCTCTCTTTACTCCTCTCTTCGCTCACTTCTCCCTCTTGAATACCTCAAGACAAGAATCCAGCAACTGTCTAATCAAAGAGACGAGCTGAAAAGCCTCTCCGGCGAGAATATGCCCGTCGGTGCAGTGGAAACGCTTAATTCCTCACGGAGGGATTCAGTGGTGGTGAGTTCGACAAATGGATTAGGAATTCAAGTTGTTTTAGACACAGCCATCCAACATAGACTCCCTGTCTCCGACATTCTTCAAGTTTTAATTGCCGAAGGACTTGAAATTATGAGTTGCATTACGACTAAAGTAAATGAGAGGGCCTGCGAGTTCCAGGTCAATGGGCAAGAAATGGCTTCTTCTTTAGGCTTCAATTTCTTCTTCCTGCCATTGGTTTTCGCCATCTTCACCAGACCAACACTCGCCGTGTTCAAACCAAGCTCGTGGAAGCTCGCTCATGCCACCTTTTATGGCGACGAAACTGCCTCCGCCACCATGGGAGGAGCTTGTGGGTATGGAAACTTGTTTACGAATGGTTATGGAACCGACACTGTGGCATTGAGCTCGACATTGTTCAACAATGGCTACGCTTGTGGGACATGCTTTCAAATCAAATGCGTGCAGTCGAAAGCATGCTACGCGAACGTACCATACACCACCGTGACAGCGACAAACCTATGCCCGCCAAATTGGTCACAGGACTCGAACGCGGGCGGGTGGTGCAACCCACCAAGAGTTCACTTCGACATGGCCAAGCCAGCGTTCATGAAGATCGCTTGGTGGAAGGCCGGAATAGTCCCTGTTGCGTACCGCAGGGTTCCGTGTGCGAAAAAAGGCGGCATTCGATTCAGCTTCCAAGGAAATGGGTATTGGTTATTGGTGTACGTGATGAACGTTGGCGGCGGCGGCGATGTGTACTCAATGGCGGTGAAAGGAAGCAAAACGGGGTGGATAACAATGAGCCATAACTGGGGAGCTTCATACCAAGCTTTTTCATCATTGGGTGGCCAAGGCCTCTCATTCAGAATCACTTCCTACACAACAAGAGAGACCCTTACTTTATGGAATGTCATTCCTTCAAATTGGCAAGTTGGGTTGACTTATAATACCAATTTCAACTTCCGTTGA 1341 48.32 MEFNIESPFSFEFGDELFPLPPISPLENTNIASKKPKTCSRRQPPPNTSNDENPNEQKRKKIMHRDVERQRRQEMSSLYSSLRSLLPLEYLKTRIQQLSNQRDELKSLSGENMPVGAVETLNSSRRDSVVVSSTNGLGIQVVLDTAIQHRLPVSDILQVLIAEGLEIMSCITTKVNERACEFQVNGQEMASSLGFNFFFLPLVFAIFTRPTLAVFKPSSWKLAHATFYGDETASATMGGACGYGNLFTNGYGTDTVALSSTLFNNGYACGTCFQIKCVQSKACYANVPYTTVTATNLCPPNWSQDSNAGGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVAYRRVPCAKKGGIRFSFQGNGYWLLVYVMNVGGGGDVYSMAVKGSKTGWITMSHNWGASYQAFSSLGGQGLSFRITSYTTRETLTLWNVIPSNWQVGLTYNTNFNFR 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7491843 7495404 + CmaCh15G011840.1 Cma15g01184 310334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01184 446 Pfam Helix-loop-helix DNA-binding domain 60 99 IPR011598 GO:0046983
Cma15g01184 446 PRINTS Expansin signature 290 300 IPR002963 GO:0009664
Cma15g01184 446 PRINTS Expansin signature 350 362 IPR002963 GO:0009664
Cma15g01184 446 PRINTS Expansin signature 250 264 IPR002963 GO:0009664
Cma15g01184 446 PRINTS Expansin signature 362 383 IPR002963 GO:0009664
Cma15g01184 446 PRINTS Expansin signature 326 339 IPR002963 GO:0009664
Cma15g01184 446 PRINTS Expansin signature 309 326 IPR002963 GO:0009664
Cma15g01184 446 PRINTS Expansin signature 427 443 IPR002963 GO:0009664
Cma15g01184 446 SUPERFAMILY PHL pollen allergen 348 440 IPR036749 -
Cma15g01184 446 PRINTS Expansin/Lol pI family signature 334 350 IPR007118 GO:0005576
Cma15g01184 446 PRINTS Expansin/Lol pI family signature 427 441 IPR007118 GO:0005576
Cma15g01184 446 PRINTS Expansin/Lol pI family signature 259 277 IPR007118 GO:0005576
Cma15g01184 446 PRINTS Expansin/Lol pI family signature 237 255 IPR007118 GO:0005576
Cma15g01184 446 PRINTS Expansin/Lol pI family signature 219 234 IPR007118 GO:0005576
Cma15g01184 446 PRINTS Expansin/Lol pI family signature 388 402 IPR007118 GO:0005576
Cma15g01184 446 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 105 IPR036638 GO:0046983
Cma15g01184 446 Pfam Lytic transglycolase 255 341 IPR009009 -
Cma15g01184 446 SUPERFAMILY Barwin-like endoglucanases 219 369 IPR036908 -
Cma15g01184 446 Coils Coil 88 108 - -
Cma15g01184 446 Gene3D - 351 446 IPR036749 -
Cma15g01184 446 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 108 IPR011598 GO:0046983
Cma15g01184 446 PANTHER EXPANSIN-A7 203 446 - -
Cma15g01184 446 MobiDBLite consensus disorder prediction 22 74 - -
Cma15g01184 446 MobiDBLite consensus disorder prediction 26 52 - -
Cma15g01184 446 SMART dpbb_1 255 341 IPR007112 -
Cma15g01184 446 Gene3D - 206 347 IPR036908 -
Cma15g01184 446 MobiDBLite consensus disorder prediction 53 73 - -
Cma15g01184 446 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 238 351 IPR007112 -
Cma15g01184 446 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 361 441 IPR007117 -
Cma15g01184 446 PANTHER EXPANSIN-A15 203 446 IPR002963 GO:0009664
Cma15g01184 446 Pfam Expansin C-terminal domain 352 430 IPR007117 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00729 Cma15g01184 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01182 Cma-Chr15:7477165 Cma15g01184 Cma-Chr15:7491843 3.02E-10 dispersed
Cma15g01184 Cma-Chr15:7491843 Cma04g00211 Cma-Chr4:1005461 4.71E-93 dispersed
Cma15g01183 Cma-Chr15:7484544 Cma15g01184 Cma-Chr15:7491843 2.02E-78 tandem
Cma15g01184 Cma-Chr15:7491843 Cma06g00729 Cma-Chr6:3697164 1.95E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36470 PF03330 DPBB_1 3.10E-20 CL0199 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01184 - - csv:101221231 514.227