Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01186 ATGTTTGCTGTCCTCACTCCTCAGCTTCAAACGCCTCCTTTGCCTCTCCAAGGGTCACCGGCAGCAGAGGTTGTCTTTCACTTTAACTACGTGTCACCGCGAGGCGACTTTGAGGCAAAAATGGTGAGAGGCAAGACTGAAATGAAGCGCATAGAGAATGCCACAAGCCGGCAAGTCACGTTTTCAAAGCGCAGAAATGGACTGCTGAAGAAAGCCTTTGAGCTATCAGTTCTGTGCGACGCTGAAGTTGCCCTTATAATCTTCTCTCCAAGAGGCAAACTTTACGAGTTTTCCAATTTCAGTATGAACAAGACAATTGATCGTTATCAGAACAGGACCAAAGATTTGATGTCGAGTAACAACACGGCTGTTGAAGATTTGCAGTTGGAGAAGGAACTCGACTCGTTTACCATCACAAAGAAGTTGGAGCACCTTGAAGTTAGTAAAAGAAAACTGTTGGGAGGTGGGTTGGATTCGTGTTCGATCGACGAGTTGCAGCAGCTCGAAAGACAGCTTGAAAGAAGCTTAACCAAGATTAGGTCAAGAAAGTATCAAATTTTGAAGGAAGAAATTATGAAACTGAAGGAAGAGGAGAAACTGTTGCTGGAAGAAAATGCAGCACTGCAGGTTGGAAGAGAATCATCAAAAAAAGGAGAAACGAAGCAGAGATCAGAATCAAAGGAGCAAGACATAATGGATGTGGAAACTGAACTGTTCATAGGACTCCCAGAAAGAAGAACAACCACCAATGGCTTCCTCTAG 762 44.09 MFAVLTPQLQTPPLPLQGSPAAEVVFHFNYVSPRGDFEAKMVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNFSMNKTIDRYQNRTKDLMSSNNTAVEDLQLEKELDSFTITKKLEHLEVSKRKLLGGGLDSCSIDELQQLERQLERSLTKIRSRKYQILKEEIMKLKEEEKLLLEENAALQVGRESSKKGETKQRSESKEQDIMDVETELFIGLPERRTTTNGFL 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7507315 7511349 - CmaCh15G011860.1 Cma15g01186 310336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01186 253 CDD MADS_MEF2_like 43 118 IPR033896 GO:0000977|GO:0045944
Cma15g01186 253 Coils Coil 162 182 - -
Cma15g01186 253 PANTHER MADS BOX PROTEIN 41 244 - -
Cma15g01186 253 PRINTS MADS domain signature 63 78 IPR002100 GO:0003677|GO:0046983
Cma15g01186 253 PRINTS MADS domain signature 43 63 IPR002100 GO:0003677|GO:0046983
Cma15g01186 253 PRINTS MADS domain signature 78 99 IPR002100 GO:0003677|GO:0046983
Cma15g01186 253 ProSiteProfiles MADS-box domain profile. 41 101 IPR002100 GO:0003677|GO:0046983
Cma15g01186 253 Pfam K-box region 137 209 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma15g01186 253 ProSitePatterns MADS-box domain signature. 43 97 IPR002100 GO:0003677|GO:0046983
Cma15g01186 253 PANTHER MADS-BOX PROTEIN SOC1 41 244 - -
Cma15g01186 253 SMART madsneu2 41 100 IPR002100 GO:0003677|GO:0046983
Cma15g01186 253 Coils Coil 184 204 - -
Cma15g01186 253 SUPERFAMILY SRF-like 43 123 IPR036879 GO:0003677|GO:0046983
Cma15g01186 253 Gene3D - 53 132 IPR036879 GO:0003677|GO:0046983
Cma15g01186 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 50 97 IPR002100 GO:0003677|GO:0046983
Cma15g01186 253 ProSiteProfiles K-box domain profile. 128 224 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01116 Cma15g01186 CCT
Cma02g01494 Cma15g01186 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01025 Cma-Chr2:6091642 Cma15g01186 Cma-Chr15:7507315 3.67E-54 dispersed
Cma08g00944 Cma-Chr8:5883424 Cma15g01186 Cma-Chr15:7507315 1.24E-33 dispersed
Cma15g01186 Cma-Chr15:7507315 Cma15g01396 Cma-Chr15:8798660 3.80E-59 dispersed
Cma08g00943 Cma-Chr8:5878385 Cma15g01186 Cma-Chr15:7507315 2.36E-25 transposed
Cma14g01999 Cma-Chr14:14020249 Cma15g01186 Cma-Chr15:7507315 1.75E-48 wgd
Cma15g01186 Cma-Chr15:7507315 Cma02g01494 Cma-Chr2:8539914 3.76E-93 wgd
Cma15g01186 Cma-Chr15:7507315 Cma06g01116 Cma-Chr6:7524448 3.65E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36471 PF01486 K-box 1.60E-20 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01186 - - csv:101220518 305.064