Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01187 ATGGCGTCGCCCTCTTCCTCTGACGAACCTCCAAATCAATCACAGGAACAGCAGCAACCGCCAGTGAAGGAGAAGGAAAAAGAGTGCGTGTATAAGACCAAAGCTGTTCAATTTCTGGGCCGCCCTACGCCTATTGTCCTCCAGAACGATAATGGCCCTTGCCCTCTCCTCGCCATATGTAATGTTCTCTTGTTGCGGAACAACTTAAATTTGGGTCCAGATGCAACAGAAGTGTCGCAGGAGAAATTGTTATCTCTGGTTGCTGAACGGTTGATTGATTCAAATAGTAATGTTGATAACAAAGATGCTGGTTTTGTTGAGAATCAACAACAGAACATTGCTGATGCCATTGATCTGCTGCCACGGCTAGCAACAGGGATAGATGTAAATATTAAGTTTAGGAGGATTGATGATTTTGAATTCACTCCAGAATGTGCCATTTTTGACTTGTTGGATATTCCTCTGTATCATGGTTGGATTGTTGATTCTCAGGATCATGATACAGCTAATGCAATTGGTTCCAAGTCCTACAACGCTATTATGGAGGAGCTCGTTGCTCTGGAAACACAACACATGGAGGGTCAGTGTACAAACAATCCTGAAGATGACTGTATTGATTTTGTAGCTGCAACAACAGCAACACTTGGAGTACCATCTCCAAGTCTTTCAAAAGCTCGATCTTTTGATGAATCACCTCGTTCAGTCTTTGATGAGCAACAAATGAGAAAAGGGGATCTTGAAGAAGAGGCAGAGTTATTGAGAGCCTTGAAGTTGTCTGAATCTGAAACACCAATCTTAATGAGTAATCATGGTGTTGCCAACGCTGAGGGGGATACTACCTCCACTAAATTGGATGAGGAGCTATCTCCTGAAAAGGTTTCAGTCATAGATTCTGTGGTGAAGACCGTAGCAAAAGACACCTGTGCTGCAGACAATAATCTTAGCCAGCAGTCAGATTCATCCATTGCAGATTCTTGCAAAATTTCATTGAGCAAGACTGATGAAGATGTGTTCCCTATTTCCAATGCAACGGAGCTAGTAAGCTCTTCACCGTTGACGACTGATGCGGGAAAGCACCTTGATCAGACTGTTGAGTCTGAAGGGCATAAGATTTGCCCTGACTTGCTGGAGAAGGACAATCATGAAACATTGACTGAGTCTGTCACCAGTTCTGGAAGAGAGGGTGCCTTGGTGAATGATAGTCCTGAGGATATTTCTCACATGAACGATAAAAGTGCTTTTTCAGCTGCTTTTGAAACAGTTGACCATAGACCGGTTGATAAGGAAGGCCCAATTGAACTTTCTGGCCTGTCTCCATCTGTTACTTGTACAGATTCAGCAGGTGGTAAAATTCAATGTATTGATGTACCTGAAGGTTTGACTTCAATTGTTGGTAGCGAGCCCATATATGAAGGAGAGGAATGTATATTGGATCCTGGAAGTTCAGTTCTTGAAGTTCGAGAGCCTGTATATGAAGGCGAAGTAGTTATTGCAGAACAAGGTTGTGGAAGCTCTGTAAATTTCTGTAGTCCACCGTCAAAGGATGAAATTAGTCCAAAACAAGGGGAGCTGATTAGGAATTTTTTGAAGAATAATGCTAGTCAGTTAACTTTTTACGGCCTTTTCTGTTTACAAGATGGCCTTAAAGAGCGTGAGCTTTGTGTTTTTTTCCGTAATAATCACTTCAGCACCATGTTTAAGCTTGATGGCCAGCTTTATCTTTTAGCTACAGACCAAGGTTACATTCATCAACCTGATTTGGTGTGGGAAAAGCTAAATGAGGTAAATGGAGACACTTTGTTTATGACGAGCAATTTCAAAGAATTCAAAGTAGAAAGTCATTCAAATGAGTCTTGGGATGAACAGAATGCTTTGACAAGCACAGCGGACTATCTTGCTAGTATTGATGCTGCGAAACATGCCGGATTGGATTTTAATTCTGACCTACAATTAGCAATAGCCCTGCAACAGCAGGAGTTTGAACAACAACCACAGCGACAAAATGTGCAGCAGCCATCTTCAGGCGGCAGTTCAACACTGGTTGTGGGTCCTCAGGTGCCTGTAACCAGTGGCAAAACCCCGCCATCTTCTTCGTCAAGGACTGACACGAAATCGAAGGAGAAGTGCAGTGTGATGTGA 2139 42.78 MASPSSSDEPPNQSQEQQQPPVKEKEKECVYKTKAVQFLGRPTPIVLQNDNGPCPLLAICNVLLLRNNLNLGPDATEVSQEKLLSLVAERLIDSNSNVDNKDAGFVENQQQNIADAIDLLPRLATGIDVNIKFRRIDDFEFTPECAIFDLLDIPLYHGWIVDSQDHDTANAIGSKSYNAIMEELVALETQHMEGQCTNNPEDDCIDFVAATTATLGVPSPSLSKARSFDESPRSVFDEQQMRKGDLEEEAELLRALKLSESETPILMSNHGVANAEGDTTSTKLDEELSPEKVSVIDSVVKTVAKDTCAADNNLSQQSDSSIADSCKISLSKTDEDVFPISNATELVSSSPLTTDAGKHLDQTVESEGHKICPDLLEKDNHETLTESVTSSGREGALVNDSPEDISHMNDKSAFSAAFETVDHRPVDKEGPIELSGLSPSVTCTDSAGGKIQCIDVPEGLTSIVGSEPIYEGEECILDPGSSVLEVREPVYEGEVVIAEQGCGSSVNFCSPPSKDEISPKQGELIRNFLKNNASQLTFYGLFCLQDGLKERELCVFFRNNHFSTMFKLDGQLYLLATDQGYIHQPDLVWEKLNEVNGDTLFMTSNFKEFKVESHSNESWDEQNALTSTADYLASIDAAKHAGLDFNSDLQLAIALQQQEFEQQPQRQNVQQPSSGGSSTLVVGPQVPVTSGKTPPSSSSRTDTKSKEKCSVM 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7515430 7524406 + CmaCh15G011870.1 Cma15g01187 310337

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01187 712 Coils Coil 236 256 - -
Cma15g01187 712 MobiDBLite consensus disorder prediction 1 19 - -
Cma15g01187 712 MobiDBLite consensus disorder prediction 220 243 - -
Cma15g01187 712 PANTHER NF-E2 INDUCIBLE PROTEIN 4 712 IPR007518 GO:0004843|GO:1990380
Cma15g01187 712 MobiDBLite consensus disorder prediction 662 712 - -
Cma15g01187 712 MobiDBLite consensus disorder prediction 1 26 - -
Cma15g01187 712 MobiDBLite consensus disorder prediction 662 700 - -
Cma15g01187 712 Pfam MINDY deubiquitinase 60 185 IPR033979 GO:0004843|GO:1990380
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01187 K01309 MINDY1_2; ubiquitin carboxyl-terminal hydrolase MINDY-1/2 [EC:3.4.19.12] - csv:101220291 1126.31
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01493 Cma15g01187 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01187 Cma-Chr15:7515430 Cma02g01493 Cma-Chr2:8530513 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g421 . . . . . . Bma07g01626 . . . Cma02g01493 Cma15g01187 Car02g01253 Car15g01076 . . Cpe05g00297 . . . . . . . . . . . . . . . . Cone6ag0736 Cone9ag0741 . Csa05g00335 Chy09g01174 . . Blo19g00300 . Bda09g00065 Bpe08g01468 . . . . Cmo02g01532 Cmo15g01251 . . . . . Cpe13g00186 Bhi12g00329 . . Lac11g2154 Hepe06g1596 . Lcy12g1714 Cla01g00315 Cam01g0325 Cec01g0317 Cco01g0334 Clacu01g0327 Cmu01g0311 Cre09g2200 Lsi09g00320 . . Cme09g01707
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005681 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01187 Cma_Chr15 FPKM 11.103448 13.333948 7.346604 7.71483 11.63157 10.621125 11.766621 12.184649 10.884241 11.748354