Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01189 ATGCAAGAAGCTGGGTTGGGAATCATGAATGGTGGTGGTGGGTCTAGCGGTGATGTTTTGGTTTCCGGCGAGGGGGTTTATAATGCCCAACTCAAGGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCCGCTCATGTTTCTTGTCTTCGTGTTGCTACGCCGATTGATAAGCTTCCGATGATCGATGCTCAGCTTTCTCAATCGCATCATGTTTTGCGCTCTTATGCTTCTTCTCATCAAAATGCCCATTCCTTGTCGCCTCATGACCGCCAGGAACTCGACAATTTTCTGGCTCAGTATATGATCGTTTTGTGCTCTTTCAAAGATCAGCTTCAACAGCATGTGAGATTTCACGCAGTGGAGGCTGTTATGGCCTGCCGTGAAATTGAAAGTACTCTACAAGCTCTAACAGGCACCGGTTTAACAATGTCCGACAATGACGACGACGACGTTCCAATGGACTTCGCACTCGATCAATCTAGCACTGATGCACACGACATGATGGGGTTCGGACCGCTGCTTCCGACCGAATCCGAAAGGTCATTAATGGAGAGGGTTCGACAAGAACTAAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAAATATTGAGAAAAAGAAGGGCAGGGAAGCTACCTGGGGATACAACTACACTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAGTCAGTGACATTCTTGAAGTCCAAGCGCAAGAGTTAA 780 46.15 MQEAGLGIMNGGGGSSGDVLVSGEGVYNAQLKAEIATHPLYEQLLSAHVSCLRVATPIDKLPMIDAQLSQSHHVLRSYASSHQNAHSLSPHDRQELDNFLAQYMIVLCSFKDQLQQHVRFHAVEAVMACREIESTLQALTGTGLTMSDNDDDDVPMDFALDQSSTDAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTLKQINNWFINQRKRNWHSNSQSVTFLKSKRKS 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7530904 7534873 + CmaCh15G011890.1 Cma15g01189 310339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01189 259 Pfam KNOX2 domain 89 140 IPR005541 GO:0003677|GO:0005634
Cma15g01189 259 SMART KNOX2_2 86 141 IPR005541 GO:0003677|GO:0005634
Cma15g01189 259 Gene3D - 177 258 - -
Cma15g01189 259 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 228 - -
Cma15g01189 259 ProSiteProfiles ELK domain profile. 192 212 IPR005539 GO:0003677
Cma15g01189 259 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 228 258 - -
Cma15g01189 259 Pfam KNOX1 domain 31 72 IPR005540 GO:0003677|GO:0005634
Cma15g01189 259 SMART KNOX1_2 29 73 IPR005540 GO:0003677|GO:0005634
Cma15g01189 259 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 228 258 - -
Cma15g01189 259 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 228 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01492 Cma15g01189 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00430 Cma-Chr9:1876271 Cma15g01189 Cma-Chr15:7530904 8.17E-101 dispersed
Cma12g00351 Cma-Chr12:1779420 Cma15g01189 Cma-Chr15:7530904 9.03E-95 dispersed
Cma15g01189 Cma-Chr15:7530904 Cma05g00030 Cma-Chr5:135056 9.96E-13 dispersed
Cma15g01189 Cma-Chr15:7530904 Cma02g01492 Cma-Chr2:8524124 1.93E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01189 - - csv:101206054 418.313