Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01190 ATGGGTGTTCTTGCTGACAGTGTCTCAGCTCCGTCGCTCAAGTTCTTGATTTACGGCCGTACCGGCTGGATTGGCGGTTTGCTTGGGAAGATCTGTGAACAACAGGGAATCCATTTCGCTTATGGCTCTGGCCGCCTCGAGAACCGTGTCTCCCTTGAGGCCGACATCGCCGCCGTTAAGCCCACTCATGTCTTCAACGCCGCTGGCGTCACTGGTCGCCCGAATGTCGACTGGTGCGAATCGCATAAGGTCGAGACCATTAGAACCAATGTGGTTGGAACCTTGAGTTTGGCCGATGTGTGCCGTGAGAGAGGGTTAATCTTGATTAATTACGCTACTGGATGCATTTTCGAGTACGATTCGGCGCATCCTCTCAATTCCGGGATTGGATTCAAGGAGGATGAAATCCCTAACTTCATTGGATCGTTTTATTCTAAGACTAAAGCTATGGTGGAGGATCTGCTGAAGAACTATGAGAATGTGTGCACCTTGCGCGTTCGGATGCCCATATCCTCTGACTTATCTAATCCTCGCAACTTCATTACGAAGATAACCAGATATGAGAAGGTTGTTGACATCCCAAACTCGATGACGATCTTGGACGAACTCCTCCCGATCTCAATCGAAATGGCGAAAAGAAACCTCACTGGAATATGGAACTTCACCAACCCGGGAGTGGTGAGCCACAATGAGATCTTGGAAATGTACAAGCAATTCATTGACCCCAATTTCACATGGAAGAACTTCACTCTGGAGGAGCAAGCCAAAGTGATCGTCGCTCCACGGAGCAACAACGAGCTTGACGCAACCAAGTTGAAGAATGAATTCCCTGAACTCCTATCCATCAAGGAATCCCTAATCAAGAACGTCTTCAAGCCAAATCAGAAAACCTCTGCAGCTTAA 903 48.39 MGVLADSVSAPSLKFLIYGRTGWIGGLLGKICEQQGIHFAYGSGRLENRVSLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLSLADVCRERGLILINYATGCIFEYDSAHPLNSGIGFKEDEIPNFIGSFYSKTKAMVEDLLKNYENVCTLRVRMPISSDLSNPRNFITKITRYEKVVDIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYKQFIDPNFTWKNFTLEEQAKVIVAPRSNNELDATKLKNEFPELLSIKESLIKNVFKPNQKTSAA 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7537134 7538933 + CmaCh15G011900.1 Cma15g01190 310340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01190 300 Pfam RmlD substrate binding domain 14 186 IPR029903 -
Cma15g01190 300 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 9 295 - -
Cma15g01190 300 CDD dTDP_HR_like_SDR_e 14 286 - -
Cma15g01190 300 Gene3D - 5 300 - -
Cma15g01190 300 PANTHER BNAC05G13120D PROTEIN 9 295 - -
Cma15g01190 300 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 275 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01190 K12451 UER1; 3,5-epimerase/4-reductase [EC:5.1.3.- 1.1.1.-] - csv:101205821 572.392
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01491 Cma15g01190 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00621 Cma-Chr5:3119882 Cma15g01190 Cma-Chr15:7537134 1.14E-170 dispersed
Cma15g01190 Cma-Chr15:7537134 Cma16g00428 Cma-Chr16:2136204 1.30E-177 dispersed
Cma15g01190 Cma-Chr15:7537134 Cma02g01491 Cma-Chr2:8520812 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g418 Blo02g01092 Blo03g00189 Bda06g00066 Bda08g00536 Bpe05g00624 Bpe07g00132 . . . . Cma02g01491 Cma15g01190 Car02g01249 Car15g01078 . . Cpe05g00300 . . . . . . . . . . . . . . . . . . . Csa05g00333 Chy09g01176 . . . . . . . . Bma12g00108 . Cmo02g01530 Cmo15g01253 . . . . . Cpe13g00184 Bhi12g00185 . . Lac11g2151 Hepe06g1594 . Lcy12g1711 Cla01g00310 Cam01g0322 Cec01g0313 Cco01g0330 Clacu01g0323 Cmu01g0308 Cre09g2202 Lsi09g00318 . . Cme09g01709
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003743 3 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 2 1 1 1 2 2 1 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01190 Cma_Chr15 FPKM 57.400002 59.469952 15.764896 14.908966 29.180805 32.438076 29.069025 8.270439 9.54064 9.044322