Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01195 ATGAAAAACGAAGATCAAGCGAGGTCCCTGTTTGGGATTTCGCTCACTGATCGACCCAAATGGCAGCAGTTTCTCATTTGCTCTTCTGGGTTTTTCTTTGGCTACCTTGTTAATGGCGTTTGCGAGGAATATGTGTATAATCGTCTTAAATTCAGTTATGGGTGGTACTTCACATTTGTGCAAGGCTTTGTTTATCTGGCTCTCATTTATCTCCAAGGGTTCACAACCAAGCAAATGGTTAACCCATGGAAGACATATGTGAAGCTCTCAGCTGTTCTTATGGGATCTCATGGCTTAACCAAAGGATCCTTGGCTTTTCTGAATTATCCAGCACAAATTATGTTCAAATCTACCAAGGTGCTTCCTGTTATGATAATGGGAGCCTTCATTCCTGGGTTGAGAAGGAAATACCCTCTTCATGAGTATATCTCTGCTCTTCTATTAGTGATTGGATTGATTCTCTTCACCTTAGCAGATGCACAGACTTCTCCAAATTTCAGTATATTTGGTGTTGTTATGATAAGCGGCGCTCTTGTTATGGACGCCTTTCTTGGAAATTTGCAGGAAGCCATTTTTACTATGAATCCTGATACTACACAGACCGAGATGTTGTTTTGCTCGACCGTAGTTGGCCTCCCTTTCTTAGTAGTACCGATGGTGCTAACGGGAGAGCTCTTTCGTGCCTGGACTTCCTGTGCTGAACACCCGTATGTCTACGGAGTCTTGGTGTTCGAAGCCATGGCGACGTTCGTTGGTCAAGTGTCGGTTCTGTCTCTAATTGCCATTTTTGGCGCTGCCACAACCGCAATGATAACAACAGCAAGAAAAGCAGTGACTCTTCTACTTTCATACCTGATATTCACCAAGCCAATGACAGAACAGCATGGGAGTGGGTTGCTGCTTATAGCCATGGGAATTGTACTGAAGATGTTGCCTGACAGTAAGTTGCCTTCAAGAACACCAAAATCAGCACACAGAGAAGAAGATGAGAAGGGAAAAACACAAGATGAAGAGAAGAGGCCATTGGTTTGA 1032 43.6 MKNEDQARSLFGISLTDRPKWQQFLICSSGFFFGYLVNGVCEEYVYNRLKFSYGWYFTFVQGFVYLALIYLQGFTTKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPLHEYISALLLVIGLILFTLADAQTSPNFSIFGVVMISGALVMDAFLGNLQEAIFTMNPDTTQTEMLFCSTVVGLPFLVVPMVLTGELFRAWTSCAEHPYVYGVLVFEAMATFVGQVSVLSLIAIFGAATTAMITTARKAVTLLLSYLIFTKPMTEQHGSGLLLIAMGIVLKMLPDSKLPSRTPKSAHREEDEKGKTQDEEKRPLV 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7572242 7574517 - CmaCh15G011950.1 Cma15g01195 310345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01195 343 Pfam UAA transporter family 23 311 IPR013657 GO:0055085
Cma15g01195 343 SUPERFAMILY Multidrug resistance efflux transporter EmrE 225 314 - -
Cma15g01195 343 PANTHER UDP-GALACTOSE/UDP-GLUCOSE TRANSPORTER 2-LIKE 1 327 - -
Cma15g01195 343 MobiDBLite consensus disorder prediction 315 343 - -
Cma15g01195 343 PANTHER SOLUTE CARRIER FAMILY 35 MEMBER B 1 327 IPR013657 GO:0055085
Cma15g01195 343 MobiDBLite consensus disorder prediction 319 343 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01195 K15277 SLC35B3, PAPST2; solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3 - csv:101204857 641.343
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01112 Cma15g01195 CCT
Cma06g01112 Cma15g01195 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01195 Cma-Chr15:7572242 Cma18g01167 Cma-Chr18:9354049 3.45E-17 dispersed
Cma14g02003 Cma-Chr14:14046480 Cma15g01195 Cma-Chr15:7572242 0 wgd
Cma15g01195 Cma-Chr15:7572242 Cma06g01112 Cma-Chr6:7502115 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g405 . . . . . . . Bma14g00580 Cmo06g01139 . . Cma15g01195 . Car15g01083 . . . . . . . . . . . . . . . . . Cone8ag0332 Cone12ag0329 . . . Csa05g00327 Chy09g01182 . . . Bda07g00499 . . Bpe11g00688 . . . . Cmo15g01259 Cma06g01112 . Car06g00949 . Cpe08g00505 Cpe13g00179 Bhi12g00199 . . . . . Lcy12g1706 . . . . . . . Lsi09g00313 . . Cme09g01715
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001533 3 4 2 2 2 2 3 2 1 2 1 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 6 2 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01195 Cma_Chr15 FPKM 16.065186 17.330179 6.526824 6.219508 5.01554 5.310712 6.205497 40.853218 46.677769 50.325901