Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cma15g01197	ATGGATTTATTCCCTCAATTTTCTGATCCTCTTCCTTATTATGGTATTTGTAATTACAATTCGGAATCGTCGTCGGCGTTTTTTGACGCCGGAACGCATCCGCTCACGGTGGCTACCTCCGACGAGGAAGTGATACTGGCGTCGAACCAGCCCAAGCGCCCGGCGGGTCGGCGGGTTTTTAAAGAGACGAGGCATCCGGTTTACAGAGGGGTACGTCGGCGGAATAACGACAAATGGGTTTGTGAGATGAGGGAGCCGAATAAGAAGACCAGGATTTGGCTCGGGACTTACCTGACGGCTGAGATGGCGGCGCGTGCACACGATGTGGCTGCCCTCGCGTTGAGAGGGAAGTCGGCTTGTCTCAATTTTGCTGACTCGGCGTGGCGGTTTCCGATTCCGGCTAGTGATGACCCGTCTGTGATCCGAGCGGCAGCAGCGATGGCAGCGAATGAGCGCAAGGATGAGGAATGTAGTGCGTGTCGGGAAGAGGACGACTGGGATGATGTGGCCATGAGTCATGACGTGTCATTGTGGAACTTTTAG	543	54.51	MDLFPQFSDPLPYYGICNYNSESSSAFFDAGTHPLTVATSDEEVILASNQPKRPAGRRVFKETRHPVYRGVRRRNNDKWVCEMREPNKKTRIWLGTYLTAEMAARAHDVAALALRGKSACLNFADSAWRFPIPASDDPSVIRAAAAMAANERKDEECSACREEDDWDDVAMSHDVSLWNF	180

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
15	7581626	7583520	-	CmaCh15G011970.1	Cma15g01197	310347

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cma15g01197	180	SMART	rav1_2	67	130	IPR001471	GO:0003700\|GO:0006355
	Cma15g01197	180	Gene3D	AP2/ERF domain	67	125	IPR036955	GO:0003700\|GO:0006355
	Cma15g01197	180	Pfam	AP2 domain	66	116	IPR001471	GO:0003700\|GO:0006355
	Cma15g01197	180	PRINTS	Ethylene responsive element binding protein signature	68	79	IPR001471	GO:0003700\|GO:0006355
	Cma15g01197	180	PRINTS	Ethylene responsive element binding protein signature	90	106	IPR001471	GO:0003700\|GO:0006355
	Cma15g01197	180	CDD	AP2	68	126	IPR001471	GO:0003700\|GO:0006355
	Cma15g01197	180	SUPERFAMILY	DNA-binding domain	67	126	IPR016177	GO:0003677
	Cma15g01197	180	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	1	161	IPR045277	GO:0003700
	Cma15g01197	180	ProSiteProfiles	AP2/ERF domain profile.	67	124	IPR001471	GO:0003700\|GO:0006355
	Cma15g01197	180	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F	1	161	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Cma02g01486	Cma15g01197	CST

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cma15g01197	Cma-Chr15:7581626	Cma05g01358	Cma-Chr5:10234374	1.26E-32	dispersed
	Cma15g01197	Cma-Chr15:7581626	Cma16g00151	Cma-Chr16:665860	1.69E-51	wgd
	Cma15g01197	Cma-Chr15:7581626	Cma02g01486	Cma-Chr2:8494391	1.22E-88	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	36472	PF00847	AP2	1.90E-13	CL0081	Cma	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cma15g01197	-		-	bhj:120092445	281.182