Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01198 ATGGGTGACCAAAAGCTCCCAATGAATGAGCTGAGCCAAACACCCATTGACCCTTTTGTTCCTTCTGTCCCCACATCCCAAAATCCTAATCCAAATCCAAATCCAAACACCCAAGAGGCTGAACCACGAGCTTTGGTTCAAGAACTGCCGCCACCACCTCCATCATCCATGGCTTCTTCAATAACTTCTTCTTCTTCTTCTTCAACTAAGAAGCATTCTTTGTATAGAGGAATCCGGTGCCGGAGCGGCAAATGGGTGTCGGAGATTCGAGAGCCACGTAAGACGAAGCGGATATGGCTCGGTACATTTCCGACGGCTGAGATGGCTGCTGCTGCTTACGACGTCGCTGCACTTGCTCTTCGTGGTGGCGATGCTGTCCTTAACTTCCCTGCCTCCATTCCCTCCTACCCTATTCCTGCCTCGACTTCTCCTATCGATATACGCGCTGCTGCCTCTACTGCTGCTGCTGCTTCTGCTGCTAATGCGTTGAAGAAAGCTGAAGGCGCTTGTAGTAATATTGAAGATACGAAGATTATTACGGTTGAAGATTGTAGCAATACGACGTTGTTGAAAACGGAGGAGTTTGTGGATGAAGAAGAGATTTTTAGTATGCCGAGTTTGCTGGCTGATATGGCTGAGGGGATGATGGTGTCGCCGCCGAGAATAAACTCACCACCGCCGTCCGATGACTCGATGGAGAATTCAGATGGAACGGAAAGCTTATGGAGCTACTTGTGA 738 49.19 MGDQKLPMNELSQTPIDPFVPSVPTSQNPNPNPNPNTQEAEPRALVQELPPPPPSSMASSITSSSSSSTKKHSLYRGIRCRSGKWVSEIREPRKTKRIWLGTFPTAEMAAAAYDVAALALRGGDAVLNFPASIPSYPIPASTSPIDIRAAASTAAAASAANALKKAEGACSNIEDTKIITVEDCSNTTLLKTEEFVDEEEIFSMPSLLADMAEGMMVSPPRINSPPPSDDSMENSDGTESLWSYL 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7589726 7590463 - CmaCh15G011980.1 Cma15g01198 310348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01198 245 MobiDBLite consensus disorder prediction 58 73 - -
Cma15g01198 245 PANTHER ETHYLENE RESPONSE FACTOR 63 244 - -
Cma15g01198 245 MobiDBLite consensus disorder prediction 1 75 - -
Cma15g01198 245 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 63 244 - -
Cma15g01198 245 Gene3D AP2/ERF domain 74 132 IPR036955 GO:0003700|GO:0006355
Cma15g01198 245 SMART rav1_2 74 136 IPR001471 GO:0003700|GO:0006355
Cma15g01198 245 MobiDBLite consensus disorder prediction 216 245 - -
Cma15g01198 245 MobiDBLite consensus disorder prediction 7 21 - -
Cma15g01198 245 SUPERFAMILY DNA-binding domain 73 132 IPR016177 GO:0003677
Cma15g01198 245 MobiDBLite consensus disorder prediction 227 245 - -
Cma15g01198 245 Pfam AP2 domain 74 122 IPR001471 GO:0003700|GO:0006355
Cma15g01198 245 ProSiteProfiles AP2/ERF domain profile. 74 130 IPR001471 GO:0003700|GO:0006355
Cma15g01198 245 CDD AP2 73 132 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma15g01198 Cma18g01218 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01198 Cma-Chr15:7589726 Cma18g01218 Cma-Chr18:9619192 1.22E-42 dispersed
Cma15g01198 Cma-Chr15:7589726 Cma16g01011 Cma-Chr16:7766235 1.18E-51 wgd
Cma15g01198 Cma-Chr15:7589726 Cma02g01485 Cma-Chr2:8491930 5.98E-82 wgd
Cma15g01198 Cma-Chr15:7589726 Cma06g00710 Cma-Chr6:3573295 3.70E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36473 PF00847 AP2 2.80E-11 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01198 - - csv:101204373 248.44