Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01207 ATGGGACTCTCCATTTTTCCTCTCTTCTTTCTTTCTCTTTTCTCCCTTTATTCTCACACCAATGCAGCTACTTTCCAAGTCCACAACAACTGCCCCTTCACTGTTTGGGCAGCTGCTTCTCCCGGCGGAGGACGACAACTCGATTCTAATCAGGATTGGACATTCGATGTGAATCCCGGCACTGCTGGAGCTCGCATTTGGGCTCGAACCAACTGCAACTTCGACGGTTCCGGTCGTGGCAGATGCGAAACCGGAGACTGTGGAGGCCTCCTCCAATGTCAAGGTTACGGTGCTCCGCCGAACACCCTGGCCGAATACGCATTAAACCAATTCAACAACATGGACTTCTTCGATATCTCTCTTGTGGATGGCTTCAACGTTCCAATGGACTTTAGTCCGACTTCTGGTGGGTGCAGGGGCATCCGGTGCAGCGCAGACATCAACGGACAATGCCCCAACGAGCTGAGGGCTCCTGGAGGCTGCAACAACCCTTGCACCGTGTTCAAAACAGGCGAATACTGTTGCAACTACGGCAACTGTGGGCCGACCCCTTTGTCCAGGTTCTTCAAGGAACGTTGCCCTGATGCGTATAGCTACCCCAAAGACGATCCAAGCAGCACCTTTACTTGCCCCGGTGGAACTAACTATAAGGTTGTCTTTTGCCCTTAG 669 52.47 MGLSIFPLFFLSLFSLYSHTNAATFQVHNNCPFTVWAAASPGGGRQLDSNQDWTFDVNPGTAGARIWARTNCNFDGSGRGRCETGDCGGLLQCQGYGAPPNTLAEYALNQFNNMDFFDISLVDGFNVPMDFSPTSGGCRGIRCSADINGQCPNELRAPGGCNNPCTVFKTGEYCCNYGNCGPTPLSRFFKERCPDAYSYPKDDPSSTFTCPGGTNYKVVFCP 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7635279 7635947 + CmaCh15G012070.1 Cma15g01207 310357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01207 222 ProSitePatterns Thaumatin family signature. 78 93 IPR017949 -
Cma15g01207 222 Gene3D Thaumatin 22 222 IPR037176 -
Cma15g01207 222 PANTHER OS03G0233200 PROTEIN 4 222 IPR001938 -
Cma15g01207 222 PANTHER THAUMATIN-LIKE PROTEIN 4 222 - -
Cma15g01207 222 CDD TLP-P 25 222 - -
Cma15g01207 222 PIRSF PR5 2 222 IPR001938 -
Cma15g01207 222 SMART tha2 25 222 IPR001938 -
Cma15g01207 222 Pfam Thaumatin family 29 222 IPR001938 -
Cma15g01207 222 PRINTS Pathogenesis-related protein signature 65 76 IPR001938 -
Cma15g01207 222 PRINTS Pathogenesis-related protein signature 78 107 IPR001938 -
Cma15g01207 222 PRINTS Pathogenesis-related protein signature 115 131 IPR001938 -
Cma15g01207 222 PRINTS Pathogenesis-related protein signature 212 221 IPR001938 -
Cma15g01207 222 PRINTS Pathogenesis-related protein signature 43 52 IPR001938 -
Cma15g01207 222 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Cma15g01207 222 SUPERFAMILY Osmotin, thaumatin-like protein 22 222 IPR037176 -
Cma15g01207 222 ProSiteProfiles Thaumatin family profile. 22 222 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01207 - - - nnu:104610403 394.045
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00727 Cma-Chr6:3689447 Cma15g01207 Cma-Chr15:7635279 3.23E-90 dispersed
Cma06g00728 Cma-Chr6:3691315 Cma15g01207 Cma-Chr15:7635279 1.02E-99 dispersed
Cma15g01207 Cma-Chr15:7635279 Cma15g01209 Cma-Chr15:7646425 8.81E-65 dispersed
Cma15g01206 Cma-Chr15:7632641 Cma15g01207 Cma-Chr15:7635279 4.89E-31 tandem
Cma15g01207 Cma-Chr15:7635279 Cma15g01208 Cma-Chr15:7637101 1.72E-122 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g388 . . . . . . . . . . . Cma15g01207 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00314 . . . . . . . Bpe11g00682 . . . . Cmo15g01272 . . . . . Cpe13g00169 . . . . . . . Cla01g00291 Cam01g0302 Cec01g0294 Cco01g0309 Clacu01g0302 Cmu01g0287 Cre09g2220 Lsi09g00294 . . Cme09g01729
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000769 1 3 0 2 2 1 3 4 2 3 2 2 6 4 3 7 2 3 2 3 3 4 5 2 6 4 5 3 2 3 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01207 Cma_Chr15 FPKM 0.0 0.0 1.65216 1.413215 4.988497 6.590906 3.720294 0.106739 0.090458 0.254885