Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01210 ATGCGGCTATCTTTGAAGTCCGCAACAATTGTCTCTTCGGCTGCCGTAGTGCCGACGGCGGATGACAGCTTAATCAAACAGATATGTGAGACTGGTGACTATGGTGGCCTCCTCCAGTGTCAAGATTACGGTACTCTGTCGAACACCCTCGCTGAATATTTATCGTACAAATATGATAGCACGAATTTGGAGATCGGTGATATTTCTCTCACAGATGGATTTAATGTTCCGATAGAGTTCAACCCCACTTCTAGCAAGTGCTCTAGCAACAATATCCGAAACAATTGTGACTTCACTGATTGGGCTGCCGCAGTACCAGACGGTGGACGACAGCTTAATCAAACTGATGTTTGGACACTCGAAGTGAAACACGACGTTACAGATGCTCGTATTTGGGCTCGAACCAACTGCAACTTCGATGCGTCAGGTCATGGTAGATTTGAGACTGGTGACTATGGTGGCCTCCTCCATTGCGAAGCTTATGGTACTCCGCCCACCACCCTCGCCGAATATATATCCTACCAGTTTGATATCTTGAACTTGGACATTGGTGATATTTCTCTCACCGATGGGTTTAATGTTCCAATGGAGTTCAGCCCCACTTCTAGTGAGTGTACTAGTGACAACTTATTGTTAATTTGA 642 45.79 MRLSLKSATIVSSAAVVPTADDSLIKQICETGDYGGLLQCQDYGTLSNTLAEYLSYKYDSTNLEIGDISLTDGFNVPIEFNPTSSKCSSNNIRNNCDFTDWAAAVPDGGRQLNQTDVWTLEVKHDVTDARIWARTNCNFDASGHGRFETGDYGGLLHCEAYGTPPTTLAEYISYQFDILNLDIGDISLTDGFNVPMEFSPTSSECTSDNLLLI 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7648476 7651255 + CmaCh15G012100.1 Cma15g01210 310360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01210 213 PANTHER OS03G0233200 PROTEIN 86 206 IPR001938 -
Cma15g01210 213 ProSiteProfiles Thaumatin family profile. 91 208 IPR001938 -
Cma15g01210 213 Pfam Thaumatin family 94 207 IPR001938 -
Cma15g01210 213 PRINTS Pathogenesis-related protein signature 130 141 IPR001938 -
Cma15g01210 213 PRINTS Pathogenesis-related protein signature 89 101 IPR001938 -
Cma15g01210 213 PRINTS Pathogenesis-related protein signature 108 117 IPR001938 -
Cma15g01210 213 PRINTS Pathogenesis-related protein signature 143 172 IPR001938 -
Cma15g01210 213 PANTHER THAUMATIN-LIKE PROTEIN 86 206 - -
Cma15g01210 213 ProSiteProfiles Thaumatin family profile. 26 88 IPR001938 -
Cma15g01210 213 SMART tha2 91 213 IPR001938 -
Cma15g01210 213 SUPERFAMILY Osmotin, thaumatin-like protein 27 89 IPR037176 -
Cma15g01210 213 PANTHER THAUMATIN-LIKE PROTEIN 25 88 - -
Cma15g01210 213 SUPERFAMILY Osmotin, thaumatin-like protein 91 206 IPR037176 -
Cma15g01210 213 Gene3D Thaumatin 18 91 IPR037176 -
Cma15g01210 213 PANTHER OS03G0233200 PROTEIN 25 88 IPR001938 -
Cma15g01210 213 Gene3D Thaumatin 92 210 IPR037176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01210 - - - cmos:111430220 192.586
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01206 Cma-Chr15:7632641 Cma15g01210 Cma-Chr15:7648476 2.47E-32 dispersed
Cma15g01210 Cma-Chr15:7648476 Cma15g01208 Cma-Chr15:7637101 1.33E-16 dispersed
Cma15g01209 Cma-Chr15:7646425 Cma15g01210 Cma-Chr15:7648476 1.02E-20 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g385 . . . . . . . . . . . Cma15g01210 . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01195 . . . . . . . . . . . Cmo15g01274 . . . . . . . . . . . . . . . . . . . . . . . Cme09g01731
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0028259 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01210 Cma_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0