Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01216 ATGACAGCTGATTCAAACCCAGAAACTTTCACTGTATGGATGAAGTCCCTTATCATGCAAGGAAATGGGCTTACTGTTTTCAATGGGAATGGTCAGATTGTTTATCGAATAGACAACTATGATGAAAAGAGTAGCAGGGAAGTCTTTTTGATGGATCTCAGAGGGAAACTTCTCTTTACGCTGCGTCAAAAGAGAATCTGGTTTCTATGTGATTGGGAAGGATATAAGGATGGTGGTGTAAATACAGAGGAAATAAAACCATTCTTTAGAGTGAAAAGGGTTCTCAGATTTTTCAGTAAAAAGTTAAGATGTGATGTGAAATTATGTGGAGGAGAATCTCGGCCAAGTTTCGGATATAGGTTTGAAGGAATTTGGGGCAGAACAGCATTCAGAATATTGGACAGCCATGGCGGACTTGTTGCAGAGGCAAAGAGAAAACAATCTTTAGGAGTTCAATTGGGAGAAGATGTTATGAGTTTGGTCCTAGTACAGACTAATTTGGATCATTCCCTACTCATGGCACTTGTGACTGTCTACCTATTGATTCAACATAGAATATGA 561 39.04 MTADSNPETFTVWMKSLIMQGNGLTVFNGNGQIVYRIDNYDEKSSREVFLMDLRGKLLFTLRQKRIWFLCDWEGYKDGGVNTEEIKPFFRVKRVLRFFSKKLRCDVKLCGGESRPSFGYRFEGIWGRTAFRILDSHGGLVAEAKRKQSLGVQLGEDVMSLVLVQTNLDHSLLMALVTVYLLIQHRI 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7693210 7694546 - CmaCh15G012160.1 Cma15g01216 310366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01216 186 SUPERFAMILY Tubby C-terminal domain-like 4 179 IPR025659 -
Cma15g01216 186 Gene3D - 3 185 IPR038595 -
Cma15g01216 186 Pfam LURP-one-related 5 178 IPR007612 -
Cma15g01216 186 PANTHER - 5 185 - -
Cma15g01216 186 PANTHER - 5 185 IPR007612 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01216 - - - cmax:111491414 303.523
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01468 Cma15g01216 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01468 Cma-Chr2:8422805 Cma15g01216 Cma-Chr15:7693210 2.99E-108 dispersed
Cma15g01216 Cma-Chr15:7693210 Cma16g00578 Cma-Chr16:2989374 7.73E-22 dispersed
Cma15g01216 Cma-Chr15:7693210 Cma15g01217 Cma-Chr15:7699112 3.98E-48 tandem
Cma15g01216 Cma-Chr15:7693210 Cma02g01467 Cma-Chr2:8418997 2.21E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g344 . . . . . . . Bma14g00614 . . Cma02g01468 Cma15g01216 Car02g01231 . . . . . . . . . . . . . . . . . . Cone8ag0316 Cone12ag0315 . . . Csa05g00298 Chy09g01207 . . . Bda07g00475 . . Bpe11g00654 . Bma12g00089 . Cmo02g01505 Cmo15g01280 . . . . . Cpe13g00163 Bhi12g00230 . . Lac11g2112 Hepe06g1561 . Lcy12g1669 Cla01g00280 Cam01g0290 Cec01g0283 Cco01g0296 Clacu01g0289 Cmu01g0276 Cre09g2231 Lsi09g00279 . . Cme09g01744
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012461 0 1 0 0 0 1 1 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01216 Cma_Chr15 FPKM 4.579012 3.255111 0.156732 0.0 0.0 0.0 0.0 0.0 0.0 0.0