Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01219 ATGGAGAGCCCTTCTCCGGCTTCATGCTGGAGCAATGTCGTGAAATCTCAGCCGCCTCCGAAGCCTCAGCATCAAACTCCGACCTCCTCCGTCCAAGTATTCGCCGATAGCTGCAAGTCCAGTCAAGGCGTTGCTGTTGCCGTTGTTGATGCCAACGCCATTATCCAAGGGGGAGAGAAGCTTTCCACCTGCGCGGATAAGTTTGTTTCCGTTCCTGAGGTTTTGGATGAGGTTCGCGATCCTGTGTCTCGCCATAGACTCGCCTTCGTTCCCTTCTCTCTCGAATCCATGGATCCCTCTCCTGAAGCTCTCAATAAAGTAATCAAGTTTGCAAGGGCAACTGGTGACTTACAGACGCTTTCAGATGTTGATATTAAACTTATTGCCCTCACTTACACGTTGGAGACTCAGATCCATGGAACCAAACATCTCCGTGAGTGTCCTCCCCCTGTCCACATGGTTAATACAAAGAGGTTACCTGAGAAAGACATGCCGGGGTGGGGCTCTAACGTTCCTAATCTTGAAGAATGGGAAGCATTAGAGCAAGATGCTGATGCTCCGTCCAATTCCACATCAAAGATTCTTCCTTTGCAGGATTTAAACTTGAACATCATCCCTTCAGATGGTCAATCTGAAGATCTTTCACTAGAGCCCAATGATGGGAATTACTTGGAGCATCAAGATGAAACTGAGAGTGGATCAAGAAGATCAAGGAGATATCCTCCAAAGAAGCAGGAAATTAATATTGTAGGGAAGAAGATGGTGGCTGATGGAATTGATGCATCTCAGGGACAATGTGATGATAATGAGGGTGAGTGGACACCTGCCGTCAGTCGAAGTACTCAGAGAAGATATATTAGGAGGAAAGCCAGACGTGAATATTATGAGTCCTTAGCTGAAAAGGATGGTCTGCAAGATGTTGAAACCACAGATGCTGACATCCAAGTGGAACCTAAGAGTTCAGGTCAATCACAGGATAAAATCTCTGAACTGCCAAATTCTGGAAATTGGAATGAGAGTCAGATAGAAGAAGGGACAAACAATAATGAGAACCTCTCACAAATTTTGAAGCAGATGAGGCTGGAAGAAGATTCAGTAAATGATGCCCTTCATGTGGAAGGGCTTGGCACTTCCACGAAAGAAGAATCTGATGAAATTGAGGTGGAGGATGCTGTGGCTGTTGAAGGCACGGATTATACAGTAAAGGATGAAATGGAACACATAGAAGACTCGAGTCAGACTAATGAAAGTGTAGACACGTCAAATGTAGATGATCTTAGCAGTGATCAGAGTTGGATGCTCAGATCCTTGTCTGAATCAAGTGTAGCATGTGTAACTGGTGACTTTGCGATGCAGAATGTTCTTCTGCAAATGGGTTTACGATTGTTGGCTCCAGGGGGAATGCAGATCCGGCAACTACATAGGTGGATTTTGAAATGTCACGCCTGCTACAATGTCACAGCTGAAATTGGAAGGATCTTTTGCCCAAAGTGTGGAAATGGTGGAACTTTACGCAAGGTAGCTGTTACAGTTGGCGAGAATGGAGTTGTATTAGCGGCTCGTAAGCCAAGGATCACTCTGCGAGGCACAAAATTTTCACTTCCTCTACCGCAAGGTGGAAGAGATGCCATTACCAAAAATCTTGTCTTACGTGAAGATCAACTCCCGCAGAAATTTCTTCATCCCAAAACCAAGAAGAAAGTTAATAAGCAGGGAGATGACTTCTATCCCGTGGATAATTTCTTCAGCCACCACAATACTGATAAGAGGGCTCCTCTGCAGCCTCCTGTAAGGCAGGCTTTAGCAGTCTTTAATGGGAAGAGAAATCCGAATGATAACCATTACTCCCGATCTAAGCATAAGTAG 1866 45.18 MESPSPASCWSNVVKSQPPPKPQHQTPTSSVQVFADSCKSSQGVAVAVVDANAIIQGGEKLSTCADKFVSVPEVLDEVRDPVSRHRLAFVPFSLESMDPSPEALNKVIKFARATGDLQTLSDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEALEQDADAPSNSTSKILPLQDLNLNIIPSDGQSEDLSLEPNDGNYLEHQDETESGSRRSRRYPPKKQEINIVGKKMVADGIDASQGQCDDNEGEWTPAVSRSTQRRYIRRKARREYYESLAEKDGLQDVETTDADIQVEPKSSGQSQDKISELPNSGNWNESQIEEGTNNNENLSQILKQMRLEEDSVNDALHVEGLGTSTKEESDEIEVEDAVAVEGTDYTVKDEMEHIEDSSQTNESVDTSNVDDLSSDQSWMLRSLSESSVACVTGDFAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACYNVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGRDAITKNLVLREDQLPQKFLHPKTKKKVNKQGDDFYPVDNFFSHHNTDKRAPLQPPVRQALAVFNGKRNPNDNHYSRSKHK 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7713149 7716392 - CmaCh15G012190.1 Cma15g01219 310369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01219 621 MobiDBLite consensus disorder prediction 222 246 - -
Cma15g01219 621 CDD PIN_Nob1-like 58 145 IPR033411 -
Cma15g01219 621 MobiDBLite consensus disorder prediction 306 347 - -
Cma15g01219 621 Gene3D - 38 153 - -
Cma15g01219 621 MobiDBLite consensus disorder prediction 314 347 - -
Cma15g01219 621 Coils Coil 342 362 - -
Cma15g01219 621 MobiDBLite consensus disorder prediction 406 425 - -
Cma15g01219 621 MobiDBLite consensus disorder prediction 206 281 - -
Cma15g01219 621 Pfam PIN domain of ribonuclease 48 134 IPR033411 -
Cma15g01219 621 PANTHER RNA-BINDING PROTEIN NOB1 3 620 IPR039907 -
Cma15g01219 621 MobiDBLite consensus disorder prediction 1 19 - -
Cma15g01219 621 PANTHER - 3 620 - -
Cma15g01219 621 SUPERFAMILY NOB1 zinc finger-like 470 533 IPR036283 -
Cma15g01219 621 PIRSF Nob1 27 621 IPR017117 GO:0000469|GO:0004521|GO:0042274
Cma15g01219 621 Pfam Nin one binding (NOB1) Zn-ribbon like 470 540 IPR014881 -
Cma15g01219 621 Gene3D - 464 539 IPR036283 -
Cma15g01219 621 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01219 K11883 NOB1; RNA-binding protein NOB1 - csv:101221544 1079.7
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01465 Cma15g01219 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01219 Cma-Chr15:7713149 Cma02g01465 Cma-Chr2:8405321 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g340 . . . . . . . Bma14g00617 . . Cma02g01465 Cma15g01219 . Car15g01099 . . Cpe05g00323 . . . . . . . . . . . . . . Cone8ag0314 Cone12ag0314 . . . Csa05g00295 Chy09g01211 . Blo03g00335 . . . . Bpe11g00652 . . . Cmo02g01502 Cmo15g01284 . . . . . Cpe13g00161 Bhi12g00235 . . Lac11g2109 . . Lcy12g1665 Cla01g00276 Cam01g0286 Cec01g0279 Cco01g0292 Clacu01g0285 Cmu01g0272 Cre09g2235 . . . Cme09g01748
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006981 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01219 Cma_Chr15 FPKM 7.781878 7.599508 8.167392 7.70458 9.68422 9.950809 10.205969 11.134385 10.391357 11.891912