Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01220 ATGGCCACCGCCTCCAAGACTTCAGTCCATGATTTCACCGTAAAGGATGCTAGAGGAAATGATGTCGACCTCAGCATTTACAAAGGAAAGGTCCTCTTGATTGTCAATGTTGCGTCTCAGTGTGGCTTGACTAATTCGAACTACACTGAACTGGCCCAACTGTATGCTAAATACAAGGACCAAGGGTTTGAGATTCTTGCATTTCCGTGCAACCAATTTGGAAGCCAGGAGCCAGGAACCAATGAAGAGATTGTGCAGTTTGCTTGCACCCGTTTTAAGGCCGAGTACCCCATTTTTAACAAGGTGGACGTGAATGGAAAGAACGCTGCTCCTCTATACAAGTACTTGAAGTCGAGCAAAGGTGGGATCTTTGGAGACGGCATTAAGTGGAACTTCTCCAAGTTCTTGGTGAACAAAGATGGAAAGGTGGTCGATCGTTACGCCCCAACAACTTCCCCGCTCAGCATTGAGAAGGATGTGAAGAAGCTGCTGGTAGCTGCTTAG 504 47.02 MATASKTSVHDFTVKDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTELAQLYAKYKDQGFEILAFPCNQFGSQEPGTNEEIVQFACTRFKAEYPIFNKVDVNGKNAAPLYKYLKSSKGGIFGDGIKWNFSKFLVNKDGKVVDRYAPTTSPLSIEKDVKKLLVAA 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7722285 7724323 + CmaCh15G012200.1 Cma15g01220 310370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01220 167 PANTHER GLUTATHIONE PEROXIDASE 2 165 IPR000889 GO:0004602|GO:0006979
Cma15g01220 167 CDD GSH_Peroxidase 8 160 IPR000889 GO:0004602|GO:0006979
Cma15g01220 167 ProSitePatterns Glutathione peroxidases signature 2. 66 73 IPR029760 -
Cma15g01220 167 PIRSF Glutathion_perox 1 167 IPR000889 GO:0004602|GO:0006979
Cma15g01220 167 SUPERFAMILY Thioredoxin-like 8 164 IPR036249 -
Cma15g01220 167 PRINTS Glutathione peroxidase family signature 27 44 IPR000889 GO:0004602|GO:0006979
Cma15g01220 167 PRINTS Glutathione peroxidase family signature 63 79 IPR000889 GO:0004602|GO:0006979
Cma15g01220 167 PRINTS Glutathione peroxidase family signature 128 137 IPR000889 GO:0004602|GO:0006979
Cma15g01220 167 Pfam Glutathione peroxidase 9 117 IPR000889 GO:0004602|GO:0006979
Cma15g01220 167 ProSiteProfiles Thioredoxin domain profile. 3 165 IPR013766 -
Cma15g01220 167 Gene3D Glutaredoxin 1 165 - -
Cma15g01220 167 ProSiteProfiles Glutathione peroxidase profile. 1 167 IPR000889 GO:0004602|GO:0006979
Cma15g01220 167 ProSitePatterns Glutathione peroxidases active site. 29 44 IPR029759 -
Cma15g01220 167 PANTHER GLUTATHIONE PEROXIDASE 2 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01220 K00432 gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9] - thj:104806387 305.449
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01461 Cma15g01220 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01676 Cma-Chr1:11441095 Cma15g01220 Cma-Chr15:7722285 1.04E-83 dispersed
Cma02g01461 Cma-Chr2:8387776 Cma15g01220 Cma-Chr15:7722285 1.64E-108 dispersed
Cma09g00400 Cma-Chr9:1696017 Cma15g01220 Cma-Chr15:7722285 1.52E-86 dispersed
Cma15g01220 Cma-Chr15:7722285 Cma17g01161 Cma-Chr17:8066068 5.55E-77 dispersed
Cma02g01807 Cma-Chr2:10048933 Cma15g01220 Cma-Chr15:7722285 1.68E-82 transposed
Cma06g01662 Cma-Chr6:10278915 Cma15g01220 Cma-Chr15:7722285 6.44E-96 transposed
Cma15g01220 Cma-Chr15:7722285 Cma02g01460 Cma-Chr2:8384894 8.32E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g331 . . . . . . . . . . Cma02g01461 Cma15g01220 Car02g01226 Car15g01101 . . . . . . . . . . . . . . . . . Cone8ag0312 . Cone6ag0772 Cone9ag0778 . Csa05g00290 Chy09g01216 . . . . Bda09g00043 . . . Bma12g00376 . Cmo02g01496 Cmo15g01286 . . . . . . Bhi12g00244 . . . . . . Cla01g00272 Cam01g0281 Cec01g0273 Cco01g0288 Clacu01g0280 Cmu01g0268 Cre09g2241 Lsi09g00268 . . Cme09g01753
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000163 11 8 6 9 6 6 7 6 6 5 4 6 8 5 6 8 6 11 3 6 6 7 6 5 5 6 5 14 6 5 198
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01220 Cma_Chr15 FPKM 9.117064 7.142802 13.119985 14.475632 1.1535 2.020122 1.635681 9.49276 13.025059 10.391133