Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01221 ATGGATGGGAGGGAAGGCATGGCATTGTCTGGTGGCTCTGCTTCTTATTACATACATAGAGGAGGAGGGCTTGGAGGGTCTGGGTCAGGGGTGCCTACGGCTGGATCCCATGCCTCCCCTGTGTTCCGACCGATGGCTAACCAGGGTGTTCTGTCTCACTCAAATCTCAGAGGCAATTCCGTTGGATCAACATATACTGTTGAACCATCTCATTCAAATTATCTTCGTGGGATGAGTATCAATGCCTCAGCTGGAGTGAACTCTGGTGAACCTGTAAAGAGGAAGAGAGGGAGGCCCCGGAAATATGCTCCAGATGGGCAGGTCTCATTGGGTCTGTCTCCCATGTCTGTTGGTTCTAAGCTCTCACCGGGAATGAGTTTGTTGACCCCCAGACGAAGACGAGGGCGGCCACCTGGTTCTGGAAGGAAACAACAATTAGCTCAACTTGGTCATGATCATGCTTATTCTTTTCAAGTTAGTTATATGCTATGTGTTTGTGCTGTTTACCATGGAAAATTTAGTGATGACATCGTAGCAAAAGTATTGTCGTTTGCACAGCAGAGGCCAAGGGCTGTTTGCATCTTGTCTGGGAATGGTACCGTTTCTTCTGTAACGCTACGTCAGCCTGCATCTACTGGCGTGAGCGTCACATATGAGGGTCATTTCCAGATATTGTGCTTGTCTGGTTCTTACTTGGTGGCTGAAGATGGCGGTCCTCGAAGTAGGACGGGCGGTATTAGTGTTTCCCTCTCTAGTCCTGATGGTCATGTTGTCGGTGGTGGCGTTGCCGTTCTTATGGCAGCTGGCCCCGTTCAGGTAGTTGTATGTAGTTTTGTTTATGGTGCAAAGATAAAAAACAAGCAGGTCGCTGGTCCGAAAAGCAACGACGATTCCAGAAACGAGCACCATGATAATATGGTTTCGCCTACGAGTGCCCCATCTGCCCACGCCTACAACCCGTCTCCGATTGGTGGTTGGCCCGGTTCCCGTTCGATTGATGTGAGAAACTCCCATACTGGAATTGACTTGACGCGAGGATGA 1041 49.66 MDGREGMALSGGSASYYIHRGGGLGGSGSGVPTAGSHASPVFRPMANQGVLSHSNLRGNSVGSTYTVEPSHSNYLRGMSINASAGVNSGEPVKRKRGRPRKYAPDGQVSLGLSPMSVGSKLSPGMSLLTPRRRRGRPPGSGRKQQLAQLGHDHAYSFQVSYMLCVCAVYHGKFSDDIVAKVLSFAQQRPRAVCILSGNGTVSSVTLRQPASTGVSVTYEGHFQILCLSGSYLVAEDGGPRSRTGGISVSLSSPDGHVVGGGVAVLMAAGPVQVVVCSFVYGAKIKNKQVAGPKSNDDSRNEHHDNMVSPTSAPSAHAYNPSPIGGWPGSRSIDVRNSHTGIDLTRG 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7725911 7731880 - CmaCh15G012210.1 Cma15g01221 310371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01221 346 MobiDBLite consensus disorder prediction 290 304 - -
Cma15g01221 346 MobiDBLite consensus disorder prediction 332 346 - -
Cma15g01221 346 PRINTS AT-hook-like domain signature 129 140 IPR017956 GO:0003677
Cma15g01221 346 PRINTS AT-hook-like domain signature 93 103 IPR017956 GO:0003677
Cma15g01221 346 MobiDBLite consensus disorder prediction 85 147 - -
Cma15g01221 346 CDD DUF296 175 278 IPR005175 -
Cma15g01221 346 Pfam Plants and Prokaryotes Conserved (PCC) domain 175 279 IPR005175 -
Cma15g01221 346 SUPERFAMILY AF0104/ALDC/Ptd012-like 174 279 - -
Cma15g01221 346 MobiDBLite consensus disorder prediction 289 346 - -
Cma15g01221 346 ProSiteProfiles PPC domain profile profile. 159 302 IPR005175 -
Cma15g01221 346 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 346 - -
Cma15g01221 346 Gene3D - 172 291 - -
Cma15g01221 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 346 IPR039605 GO:0003680
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01221 - - - csv:101219973 545.814
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01007 Cma15g01221 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01221 Cma-Chr15:7725911 Cma08g00912 Cma-Chr8:5684400 4.52E-75 dispersed
Cma15g01221 Cma-Chr15:7725911 Cma02g01459 Cma-Chr2:8380805 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g329 Blo02g01107 Blo03g00211 . Bda08g00520 Bpe05g00642 Bpe07g00112 . . . . Cma02g01007 Cma15g01221 Car02g00752 Car15g01102 . . Cpe05g00713 . . . . . . . . . . . . . . Cone8ag0311 Cone12ag0311 Cone6ag0774 . . Csa05g00288 Chy09g01218 . . . . . . . Bma05g00817 Bma12g00188 . Cmo02g01022 Cmo15g01287 . . . . Cpe08g00855 . Bhi12g00246 . . . . . Lcy12g1658 Cla01g00271 Cam01g0279 Cec01g0271 Cco01g0286 Clacu01g0278 Cmu01g0266 Cre09g2242 Lsi09g00265 . . Cme09g01755
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005578 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 2 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01221 Cma_Chr15 FPKM 15.056307 17.736574 14.166086 13.692253 47.035404 38.46064 45.273296 13.301922 13.733891 14.504058