Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01230 ATGGCGACGGGAGAACCCTCACAAGCTCCATCCCAAGATTTACAGTCCCTCTCAATCGCTGACGCTAAGGTGCAGGAGCCGGGTTCTTCATCAAACTCTTCAAATCAGTTGAGTTTGGAGGAGAAGTTTAAAATTGTTAGAAGTATTGGGGAAGAATGTATCCAAGAGGATGAGCTGCGGAATTTGCTCGAGAAGAAGCCGGAACCTGTGTGCTATGATGGGTTCGAACCATCTGGGAGAATGCATATTGCTCAGGGAGTGATGAAGACAATAAATGTCAACAAGCTTACTGCTTCTGGGTGCCGAGTGAAAATATGGATTGCAGACTGGTTTGCTCAGCTTAACAACAAAATGGGGGGTGATCTGAAAAAAATTGAGACTGTTGGCCGCTACCTAATTGAGATATGGAAAGCAGTTGGGATGGATCTGGAAGGAGGTAAGGTTGAATTTTTGTGGTCGTCGAAGGAGATTAACTCAAGGGCGTCGGAATACTGGCCCCTTGTAATGGATATCGCTCGGAAAAACAAACTTCCAAGGATAATTAGGTGTAGCCAAATTATGGGAAGAACTGAACAAGATGAGTTGACTGCTGCCCAAATTCTCTACCCATGCATGCAATGTGCGGACATTTTTTTCCTTAAGGCTGATATCTGTCAACTGGGAATGGATCAACGGAAAGTAAATGTACTTGCAAGAGAGTATTGTGATGACATCAAGAGGAAGAACAAGCCTATCATCCTATCGCACCATATGTTACCTGGCTTACAGCAGGGGCAGGAAAAGATGTCAAAAAGTGATCCATCGTCCTCTATATTTATGGAAGATGATGAGGCAGAAGTGAACTTGAAGATAAAGAAGGCATATTGCCCTCCATTGATCGTGGAAGGGAATCCATGCTTAGAGTACATAAAGTATCTCATTTTCCCTTGGTTCAAGGAGTTCACTGTGGAACGAAATGCAGATCATGGTGGAAATAAGACCTTCACAACCTTCGAAGAATTAGTTGCTGACTACGCATCAGGAGTACTGCATCCAGGTGATCTTAAACCAGCTTTGTCCAAGGCTTTGAATAAGATATTGGAGCCTGTACGAGATCACTTCAAAAATGATAGCAATGCCAAAGATTTATTGAAGAGGGTCAAGGTATGTGCTTAA 1155 43.29 MATGEPSQAPSQDLQSLSIADAKVQEPGSSSNSSNQLSLEEKFKIVRSIGEECIQEDELRNLLEKKPEPVCYDGFEPSGRMHIAQGVMKTINVNKLTASGCRVKIWIADWFAQLNNKMGGDLKKIETVGRYLIEIWKAVGMDLEGGKVEFLWSSKEINSRASEYWPLVMDIARKNKLPRIIRCSQIMGRTEQDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSSIFMEDDEAEVNLKIKKAYCPPLIVEGNPCLEYIKYLIFPWFKEFTVERNADHGGNKTFTTFEELVADYASGVLHPGDLKPALSKALNKILEPVRDHFKNDSNAKDLLKRVKVCA 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7802621 7805264 + CmaCh15G012300.1 Cma15g01230 310380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01230 384 PANTHER TYROSINE-TRNA LIGASE 23 383 - -
Cma15g01230 384 PIRSF TyrRS_arch_euk 36 384 IPR023617 GO:0004831
Cma15g01230 384 MobiDBLite consensus disorder prediction 1 36 - -
Cma15g01230 384 Gene3D HUPs 192 384 IPR014729 -
Cma15g01230 384 Gene3D HUPs 53 180 IPR014729 -
Cma15g01230 384 Pfam tRNA synthetases class I (W and Y) 67 361 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cma15g01230 384 PANTHER BNAANNG11300D PROTEIN 23 383 - -
Cma15g01230 384 SUPERFAMILY Nucleotidylyl transferase 44 372 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01230 K01866 YARS, tyrS; tyrosyl-tRNA synthetase [EC:6.1.1.1] - csv:101218148 738.028
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g319 . . . . . . . . . . . Cma15g01230 . Car15g01108 . . . . . . . . . . . . . . . . . . . Cone6ag0780 Cone9ag0785 . Csa05g00278 Chy09g01231 . Blo03g00338 . . . . . . . . . Cmo15g01294 . . . . . Cpe13g00154 Bhi12g00268 . . . . . Lcy12g1647 Cla01g00259 Cam01g0266 Cec01g0257 Cco01g0272 Clacu01g0265 Cmu01g0254 Cre09g2255 Lsi09g00254 . . Cme09g01766
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008780 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01230 Cma_Chr15 FPKM 92.846321 94.415298 71.047943 73.608345 78.14463 73.862167 81.255707 73.62925 74.044792 75.128761