Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01234 ATGGGCAATGAAGTGCAATTATTAGGAAGTGGAGGTCCGTTTCTGCAAAGAAAAGCTTTGACAAGGAATCCGAAGAACGACGACGATTATTGTTTAATTATGTCGTTAAAAAGGTTCCCGCCGTTTCCAACGAGGCGTTTTCTTGGTGGGTTCGCCATATCCGCTCTGGTTTTGCTGCTAATTTTTCCTTGTCATGTGACGGCTGGGGATATTGTTCATCATGACGATTTGACTCCCAAAAAGCCTGGCTGTGAGAACGATTTCATTCTGGTGAAAGTTCAAACTTGGATTGATGGCAAAGAAGCTAGTGAATTTGTTGGCGTTGGTGCTAGATTTGGCGCTACCATCGTGTCAAAGGAGAAAAATGCAAACCAAACACGCCTAGTTCTTGCACATCCCCGTGATTGTTGCGGTGTGCCAAAGAACAAGCTTTCTGGAGATATAATCATGGTTGATCGAGGTCACTGCAAATTTACTACTAAAGCAAATATTGCAGAAGCTGCAGAGCTTTACAAGATGGTTTGTGATCCTGATGAGACTGATCTTGATATACATATACCTGCTGTCATGCTCCCACAAGATGCTGTGTCTGTTCAGCTCTACTCTCCACTACGACCACCTGTCGACATAGCTGAAGTATTCTTATGGTTGATGGCTGTCGGTATGATCTTATGCTCATCCTTTTGGTCTGCCTGGAGTGCTAGGGAAGCTGCCATTGAGCAGGACAAGCTACTAAAGGATGGTGCAGATGATATTCAAAATGCTGAAGATGTGGGCAGCCCTGGTGTTGTGTATATCAACATGGCATCAGCCGTCCTGTTTGTTGTCGTTGCTTCGTGCTTTTTGATTTTGCTTTACAAACTCATGTCGTATTGGTTCATCGAGCTTTTGGTTGTCCTTTTCTGCATAGGAGGTGCAGAGGGCTTGCAAACTTGTTTGGTCGCTTTATTGTCAAGATGCTTTAAGCATGTTGGAGAATCATACATCAAAGTGCCATTCTTTGGAGCTGTTTCATACCTCACACTGGCTGTTTCTCCATTCTGCATAGCATTTGCTGTTCTTTGGGCTGTTTATCGAAACGTGTCGTTTGCCTGGATCGGTCAAGACATGCTTGGAATTGCACTGATCATTACAGTTCTTCAAATAGTTCGCATACCAAATCTCAAGGTTGGAACAGTGCTGCTCAGTTGTGCCTTCCTATATGATATCTTTTGGGTCTTTGTTTCTAAGAAGTTGTTCAATGAAAGTGTGATGATTGTGGTAGCTCGTGGTGATAAAAGCGGAGAGGATGGCATCCCAATGCTGCTGAAGATCCCTCGCATGTTTGATCCATGGGGTGGTTATAGCATTATTGGATTTGGTGATATCCTTTTACCTGGACTCGTTGTAGCGTTTTCTCTCAGGTATGACTGGTTGGCAAATAAGAGCCTCCGGCTCGGTTACTTCTTACCAGCAATGCTTGCTTATGGGTCAGGTCTTCTGATCACCTATGTTGCTTTGAACCTGATGGACGGTCACGGCCAGCCTGCGCTGCTTTACATCGTCCCGTTTATGCTCGGAACCCTTTTGACACTGGGGAAGAAGAGAGGAGATTTGGGGATTCTTTGGACAAAAGGAGAACCAGAGAGGGCCTGCCCTCATGCCCATCTGCTCATCAATGAGGATTAA 1668 44.84 MGNEVQLLGSGGPFLQRKALTRNPKNDDDYCLIMSLKRFPPFPTRRFLGGFAISALVLLLIFPCHVTAGDIVHHDDLTPKKPGCENDFILVKVQTWIDGKEASEFVGVGARFGATIVSKEKNANQTRLVLAHPRDCCGVPKNKLSGDIIMVDRGHCKFTTKANIAEAAELYKMVCDPDETDLDIHIPAVMLPQDAVSVQLYSPLRPPVDIAEVFLWLMAVGMILCSSFWSAWSAREAAIEQDKLLKDGADDIQNAEDVGSPGVVYINMASAVLFVVVASCFLILLYKLMSYWFIELLVVLFCIGGAEGLQTCLVALLSRCFKHVGESYIKVPFFGAVSYLTLAVSPFCIAFAVLWAVYRNVSFAWIGQDMLGIALIITVLQIVRIPNLKVGTVLLSCAFLYDIFWVFVSKKLFNESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLVVAFSLRYDWLANKSLRLGYFLPAMLAYGSGLLITYVALNLMDGHGQPALLYIVPFMLGTLLTLGKKRGDLGILWTKGEPERACPHAHLLINED 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7815763 7823358 + CmaCh15G012340.1 Cma15g01234 310384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01234 555 Pfam Signal peptide peptidase 264 540 IPR007369 GO:0004190|GO:0016021
Cma15g01234 555 PANTHER SIGNAL PEPTIDE PEPTIDASE-LIKE 2 51 551 - -
Cma15g01234 555 SMART psh_8 262 529 IPR006639 GO:0004190|GO:0016021
Cma15g01234 555 Gene3D - 92 198 - -
Cma15g01234 555 PANTHER SIGNAL PEPTIDE PEPTIDASE 51 551 IPR007369 GO:0004190|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01234 K09597 SPPL2B; signal peptide peptidase-like 2B [EC:3.4.23.-] - csv:101216966 970.304
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01443 Cma15g01234 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01234 Cma-Chr15:7815763 Cma17g00435 Cma-Chr17:2574258 0 dispersed
Cma15g01234 Cma-Chr15:7815763 Cma16g00118 Cma-Chr16:546752 3.26E-21 wgd
Cma15g01234 Cma-Chr15:7815763 Cma18g01252 Cma-Chr18:9766061 6.76E-22 wgd
Cma15g01234 Cma-Chr15:7815763 Cma02g01443 Cma-Chr2:8301676 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g312 . . . . . . . . . . Cma02g01443 Cma15g01234 Car02g01211 Car15g01111 . . Cpe05g00343 . . . . . . . . . . . . . . Cone8ag0298 Cone12ag0304 . . . Csa05g00272 Chy09g01236 . . . . . . . . . . Cmo02g01479 Cmo15g01297 . . . . . Cpe13g00152 Bhi12g00274 . . Lac11g2079 Hepe06g1537 . Lcy12g1640 . . . . . . . Lsi09g00248 . . Cme09g01770
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002068 3 3 2 4 2 1 4 1 1 2 1 1 2 2 2 3 1 4 4 1 2 2 2 1 3 2 2 2 3 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01234 Cma_Chr15 FPKM 0.317511 0.0 3.693409 3.669787 2.720129 3.972649 2.603992 0.710333 0.592338 0.716749