Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01235 ATGGAGGGCAAAGAAGAGGACGTGAAGCTAGGAGCTAACAAGTACTCTGAAAGACAGCCAATCGGTACATCAGCTCAGACGGACAAGGACTACAAAGAGCCGCCGCCTGCTCCGCTGTACGAGCCCGGCGAGCTCACGTCATGGTCCTTTTACAGAGCCGGAATTGCGGAGTTCGTGGCCACATTCTTGTTCCTGTACATCACCATCTTGACGGTGATGGGAGTCAGCCGAGCTCCGTCCAAATGCTCCACCGTCGGCATTCAGGGCATCGCTTGGGCGTTCGGTGGCATGATCTTCGCTCTCGTCTACTGCACCGCCGGCATCTCCGGTGGGCATATTAATCCGGCGGTGACGTTCGGGCTTTTCTTGGCGAGAAAGCTGTCGCTCACCAGAGCCATATTCTACATCATAATGCAGTGCCTAGGCGCAATCTGCGGCGCCGGCGTCGTGAAGGGTTTTGAGAAGTCCATCTACGAGCAAAAGCTAGGCGGCGCTAACTTCGTCGCCGCTGGCTACACCAAAGGCAGCGGCCTCGGCGCCGAGATCATCGGCACCTTCGTTCTGGTCTACACCGTCTTCTCTGCCACCGACGCCAAGAGAAACGCCAGAGATTCTCACGTCCCTATTTTGGCTCCTCTTCCAATTGGGTTTGCTGTGTTCTTGGTTCATTTGGCCACCATTCCGATCACCGGCACCGGCATTAACCCGGCGAGAAGTCTCGGAGCTGCCATTATCTACAACAGGGAACACGCATGGGATGACCATTGGATCTTCTGGGTGGGGCCGTTCATTGGAGCTGCTCTGGCTGCGATTTACCACCAGATCATCATCAGAGCTATTCCATTCAAGGCCAGAGCTTGA 861 55.75 MEGKEEDVKLGANKYSERQPIGTSAQTDKDYKEPPPAPLYEPGELTSWSFYRAGIAEFVATFLFLYITILTVMGVSRAPSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFEKSIYEQKLGGANFVAAGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNREHAWDDHWIFWVGPFIGAALAAIYHQIIIRAIPFKARA 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7826897 7828790 + CmaCh15G012350.1 Cma15g01235 310385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01235 286 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Cma15g01235 286 Gene3D Glycerol uptake facilitator protein. 37 284 IPR023271 -
Cma15g01235 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 285 IPR034294 -
Cma15g01235 286 MobiDBLite consensus disorder prediction 1 36 - -
Cma15g01235 286 Pfam Major intrinsic protein 44 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma15g01235 286 PANTHER AQUAPORIN PIP1-2-RELATED 1 285 - -
Cma15g01235 286 TIGRFAM MIP: MIP family channel proteins 56 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma15g01235 286 CDD MIP 52 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma15g01235 286 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma15g01235 286 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma15g01235 286 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma15g01235 286 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma15g01235 286 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma15g01235 286 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma15g01235 286 SUPERFAMILY Aquaporin-like 44 278 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01128 Cma-Chr4:5825359 Cma15g01235 Cma-Chr15:7826897 0 dispersed
Cma04g01129 Cma-Chr4:5826721 Cma15g01235 Cma-Chr15:7826897 2.46E-155 dispersed
Cma06g00236 Cma-Chr6:1199027 Cma15g01235 Cma-Chr15:7826897 9.80E-174 dispersed
Cma15g01235 Cma-Chr15:7826897 Cma20g00484 Cma-Chr20:2339049 4.30E-142 dispersed
Cma15g01235 Cma-Chr15:7826897 Cma02g01443 Cma-Chr2:8301676 2.13E-177 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01235 K09872 - csv:101217440 551.206