Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01239 ATGGGAGGTTGCTGCTGCTGTTCCTCGAAAGAAACAGAATCAAATATTGCACCAGGCTACTATTATTACCCAAGAGCATCGGAGGAGCATGTTCCCCTGTCATCTCCACTTAATGCTCCCCCAGCATTTCCAATGGGGCTTTTAGTCGATACAAACCTGGATACATCAATCCCAGACACGTATAGATCGCCTCCATTGCCTATGCCATATAATGTTGTTTTATCACATCCACATACTCCACCTGTGGCTCAAGAAATCTGCAGTAATAAGAATGATGCTGCAGCTCAGACTACCAATTCCGATACAATTCAAGAAACAACATGCATAAACACTCGGGAAACTTCAGCCAAATGTGAAGGCATCGACGATGAGTCAGACTGCAAGAAGCATACAGATTTTGAAGTGGACACATTAAAGGAATCTGAAATCGAACTTTCAAAGGGTGTGAAATCTGTGGTCTTACCAATTGAAGAGGAGGATGTTTGTCCCATCTGTTTGGAAGAATATGACGGAGAGAATCCAAAACTTACAACAAAATGCGAGCATCATTTTCATCTTGCATGCATTTTGGAATGGATGGAAAGAAGTGATATCTGTCCTGTGTGCGATCAGGTGTGTTTCAGTTTATGCTTTATCATCCGTCATCACCTCATACTCATTAGCGTGTAA 669 42.15 MGGCCCCSSKETESNIAPGYYYYPRASEEHVPLSSPLNAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYNVVLSHPHTPPVAQEICSNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLKESEIELSKGVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWMERSDICPVCDQVCFSLCFIIRHHLILISV 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7852624 7855654 - CmaCh15G012390.1 Cma15g01239 310389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01239 222 Pfam Ring finger domain 161 202 IPR001841 -
Cma15g01239 222 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 206 - -
Cma15g01239 222 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Cma15g01239 222 SUPERFAMILY RING/U-box 156 208 - -
Cma15g01239 222 SMART ring_2 162 202 IPR001841 -
Cma15g01239 222 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 206 - -
Cma15g01239 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 208 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01239 - - - cmos:111435815 426.787
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01003 Cma15g01239 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g02047 Cma-Chr14:14267968 Cma15g01239 Cma-Chr15:7852624 2.13E-41 dispersed
Cma15g00221 Cma-Chr15:1097974 Cma15g01239 Cma-Chr15:7852624 3.28E-26 dispersed
Cma15g01239 Cma-Chr15:7852624 Cma04g02813 Cma-Chr4:18830632 1.22E-24 dispersed
Cma15g01239 Cma-Chr15:7852624 Cma02g01438 Cma-Chr2:8277306 8.52E-124 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g12 . . . . . Bpe07g00103 . Bma14g00607 . . Cma02g01003 Cma15g01239 . Car15g01116 . . Cpe05g00349 . . . . . . . . . . . . . . . Cone12ag0296 . . . Csa05g00265 Chy09g01243 . . . Bda07g00483 . . Bpe11g00660 . . . Cmo02g01472 Cmo15g01303 . . . . . Cpe13g00146 Bhi12g00284 . . . . . . Cla01g00249 Cam01g0254 Cec01g0246 Cco01g0260 Clacu01g0252 Cmu01g0242 Cre09g2267 Lsi09g00240 . . Cme09g01778
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004601 2 3 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01239 Cma_Chr15 FPKM 25.236408 25.501125 31.256672 28.721327 7.001602 7.817806 7.186793 44.830879 45.181007 44.748032