Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01240 ATGAGCGCGCACAACTCCAAGTATTTTTCCACCACCAAAAAGGGTGAAATCCCCGAGCTCAAAGAGGAGCTTAATTCTCAGTACAAGGCATTTCTCTATCTTGTCAGTAGTAGCGATCGTGAATCGGGTTCGCCGGATAAAAGAAAAGATGCTGTTAAAAAGGTCATTGCTGCAATGACGGTTGGGAAGGATGTATCGTCACTTTTCACAGACGTGGTAAACTGCATGCAGACTGAAAATTTGGAGCTGAAAAAGCTGGTTTACTTGTATCTAATTAATTATGCCAAAAGCCAGCCTGATCTAGCCATTCTAGCAGTGAACACATTTGTTAAAGATTCACAAGATCCGAATCCTTTAATTCGTGCGTTGGCCGTAAGGACAATGGGATGCATTCGTGTGGATAAAATTACAGAATACTTGTGTGATCCTCTTCAGAGATGCCTTAAGGATGATGACCCTTATGTCCGCAAGACAGCTGCCATCTGTGTTGCCAAACTATTTGATATAAATGCTGAGTTAGTTGAGGACAGAGGTTTTTTGGAATCTCTCAAAGACTTAATATCAGATAACAATCCAATGGTTGTTGCAAATGCTGTGGCTGCTCTTGCTGAGATACAGGAGAATAGTAGCAGACCCATCTTTGAGATAACAAGTCACACACTGTCAAAACTTCTCACAGCTTTGAATGAGTGTACTGAGTGGGGTCAAGTTTTTATACTGGACGCACTTTCTAGATTCAAAGCAGAGGATGCTCGTGAAGCAGAAAATATAATAGAGAGAGTTACTCCACGGCTACAACATGCTAACTGTGCTGTTGTTCTGTCAGCTGTGAAGATGATTCTTCAACAAATGGAACTGATCAGTAGCACTGATGTAGTTCGAAATCTTTGTAAAAAGATGGCTCCTCCTCTTGTTACTTTGCTTTCGGCAGAACCCGAGATACAATATGTTGCATTGCGAAATATCAACCTTATAGTACAGAAACGTCCTACTATTCTTGCACATGAAATTAAGGTTTTCTTCTGTAAATACAATGATCCAATCTATGTAAAGATGGAGAAGTTAGAGATCTTGATTAAGCTTGCATCTGAACGGAATATTGACCAGGTTCTGCTGGAGTTCAAGGAGTATGCCACTGAAGTAGATGTAGATTTTGTAAGAAAAGCTGTCCGTGCCATTGGTAGGTGTGCAATCAAGCTAGAGAGAGCTGCTGAACGATGCATAAGCGTGTTGCTCGAGCTGATCAAAATTAAAGTCAACCACGTGGTTCAAGAGGCTATTATAATTATCAAGGATATTTTTAGGAGATATCCTAACACTTATGAGTCCATCATTGCAACACTCTGTGAAAGCTTAGACACGTTGGATGAGCCAGAAGCCAAGGCATCAATGATCTGGATTATTGGAGAGTATGCGGAGAGAATTGACAATGCAGATGAACTTCTTGAAAGCTTCTTGGAGAATTTCCCTGAGGAACCTGCACAAGTCCAGCTTCAATTGCTGACTGCAACTGTCAAACTTTTTCTTAAGAAGCCAACCGAGGGACCACAGCAGATGATTCAGGTTGTTTTGAACAATGCTACTGTGGAGACGGACAATCCTGATCTGCGGGACCGCGCATATATCTATTGGCGGCTCCTATCAACTGATCCAGAGGCAGCGAAGGATGTGGTTCTTTCCGAGAAGCCTGTGATTGGCGATGATTCTAATCTGCTTGATTCCTCGCTCCTAGATGAGCTCCTTGCCAATGTTGCCACTTTATCGTCTGTATATCACAAGCCCCCTGAAGCATTTGTTACCCGTACGAAGATTGCTCAGAGAACAGATGAAGAAGATTTTCCTGAAGGAAGTGACACAGGGTATTCAGAATCTCCTGTCCACGTTGGTGGTGCAATGCCTCCAACAACCTCAGATGCACCTTATTCAGTACCAAAGAGACTGGCCCTTGGCTTAGTTGCTCCTCCACCTCCAGTTTCAGTTCCGGATTTACTTGGTGACCTGATTGGATTGGATAATAATGCTATTGTCCCTTTTGATCAGCCTGCTGCTTCTGCTGACCCTCCATTGCCTATCCTGCTACCAGCATCAGCTGGTCAAGGCTTACAAATTAGTGCCCAGCTCACACGATTGGACGGTCAAGTATTTTACAGTTTATTGTTCGAGAACAATACACAGATTACATTGGATGGATTCATGATCCAGTTTAACAAGAATACCTTTGGTCTCGCCCCTGCAGGACCTTTACAGGTTCCATCGTTGCAGCCTGGGTCAATTGTTAGTACTCTCCTGCCTATGGTAGTGTTCCAAAATATGTCTCAAGGTCCCCCAAGTTCACTTTTGCAGGTAGCCGTGAAGAACAATCAGCAGCCAGTGTGGTACTTCAATGATAAAATCTCAATGCACGTTTTCTTCACCGATGATGGGAGGATGGAACGTGCAAACTTTCTTGAGACGTGGAGGTCCCTCCCAGACTCAAATGAAGTTTCCAAGGATTTCCCTGCCATTGTTCTAACCAATATGGAGGCTGTTCTGGAACGACTGGCTGCTACAAACATGTTCTTCATTGCTAAAAGGAAGCACACAAACCAAGACGTTTTCTATTTCTCTACCAAAATTCCCAGAGGAATCCCTTTCTTGATCGAATTGACTGCGCTTATCGGAACCCCGGGACTGAAATGCGCCATCAAAACCCCGAACATTGACATGGCACCACTCCTTTTTGATGCCTTGGAGACCCTTCTCAAGGAATGA 2751 43.48 MSAHNSKYFSTTKKGEIPELKEELNSQYKAFLYLVSSSDRESGSPDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLFDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIQENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRFKAEDAREAENIIERVTPRLQHANCAVVLSAVKMILQQMELISSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEILIKLASERNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNHVVQEAIIIIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLENFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLSEKPVIGDDSNLLDSSLLDELLANVATLSSVYHKPPEAFVTRTKIAQRTDEEDFPEGSDTGYSESPVHVGGAMPPTTSDAPYSVPKRLALGLVAPPPPVSVPDLLGDLIGLDNNAIVPFDQPAASADPPLPILLPASAGQGLQISAQLTRLDGQVFYSLLFENNTQITLDGFMIQFNKNTFGLAPAGPLQVPSLQPGSIVSTLLPMVVFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKISMHVFFTDDGRMERANFLETWRSLPDSNEVSKDFPAIVLTNMEAVLERLAATNMFFIAKRKHTNQDVFYFSTKIPRGIPFLIELTALIGTPGLKCAIKTPNIDMAPLLFDALETLLKE 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7856949 7868815 - CmaCh15G012400.1 Cma15g01240 310390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01240 916 Gene3D - 685 798 IPR013037 GO:0006886|GO:0016192
Cma15g01240 916 SUPERFAMILY ARM repeat 14 597 IPR016024 -
Cma15g01240 916 SMART alpha_adaptinc2 681 795 IPR008152 GO:0006886|GO:0016192
Cma15g01240 916 Pfam Adaptin N terminal region 39 549 IPR002553 GO:0006886|GO:0016192|GO:0030117
Cma15g01240 916 PANTHER BETA-ADAPTIN-LIKE PROTEIN B 1 914 - -
Cma15g01240 916 Pfam Beta2-adaptin appendage, C-terminal sub-domain 806 914 IPR015151 GO:0006886|GO:0016192|GO:0030131
Cma15g01240 916 PIRSF Beta_adaptin 1 746 IPR016342 GO:0015031|GO:0030276
Cma15g01240 916 Gene3D - 3 608 IPR011989 -
Cma15g01240 916 SMART B2_adapt_app_C_2 804 915 IPR015151 GO:0006886|GO:0016192|GO:0030131
Cma15g01240 916 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 803 915 IPR009028 GO:0006886|GO:0016192|GO:0030117
Cma15g01240 916 Pfam Adaptin C-terminal domain 699 794 IPR008152 GO:0006886|GO:0016192
Cma15g01240 916 SUPERFAMILY Clathrin adaptor appendage domain 687 801 IPR013041 -
Cma15g01240 916 Gene3D - 800 916 IPR012295 -
Cma15g01240 916 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 1 914 IPR026739 GO:0016192
Cma15g01240 916 Coils Coil 910 916 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01240 K12392 AP1B1; AP-1 complex subunit beta-1 - csv:101215532 1610.12
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01437 Cma15g01240 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01595 Cma-Chr1:11016782 Cma15g01240 Cma-Chr15:7856949 5.65E-107 dispersed
Cma04g00212 Cma-Chr4:1011954 Cma15g01240 Cma-Chr15:7856949 5.11E-26 dispersed
Cma04g01181 Cma-Chr4:6019659 Cma15g01240 Cma-Chr15:7856949 9.49E-26 dispersed
Cma11g01808 Cma-Chr11:12088424 Cma15g01240 Cma-Chr15:7856949 9.18E-12 dispersed
Cma14g01231 Cma-Chr14:9766858 Cma15g01240 Cma-Chr15:7856949 2.25E-14 dispersed
Cma15g01240 Cma-Chr15:7856949 Cma20g00855 Cma-Chr20:4104105 3.78E-16 dispersed
Cma15g01240 Cma-Chr15:7856949 Cma02g01437 Cma-Chr2:8269234 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g18 . . . . . . . . . . Cma02g01437 Cma15g01240 Car02g01205 Car15g01117 . . Cpe05g00350 . . . . . . . . . . . . . . Cone8ag0289 Cone12ag0295 Cone6ag0794 . . Csa05g00264 Chy09g01244 . . Blo19g00330 . . . . . . . Cmo02g01471 Cmo15g01305 . . . . . Cpe13g00145 Bhi12g00287 . . Lac11g2070 Hepe06g1527 . Lcy12g1632 Cla01g00248 Cam01g0252 Cec01g0245 Cco01g0258 Clacu01g0250 Cmu01g0240 Cre09g2268 Lsi09g00238 . . Cme09g01779
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002730 1 2 1 1 1 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 4 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01240 Cma_Chr15 FPKM 2.647517 2.432604 2.513306 2.529304 2.862591 3.113096 2.862423 5.111059 4.868319 4.813697