Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01241 ATGGGACATGGTGATAAAGGAAGATCAAGCAAACGACCTAAATTCGGCAAGGAGGATTATAAGAAAGCTCATTTTGAAGAAGAAGATGCCTATCATTTTGAAGAGTTTGACGACGATGATCGCAATGGCGATAAAGAAGGGGGCAAGAGGGATTTCAGCAAACTAGAGTTAAAACCTGACCATACTAACCGGCCCTTATGGGCCTGTTCTGATGGCCGCATATTCCTTGAAACTTTTTCGCCCTTGTACAAACAAGCATACGATTTCCTTATTGCTATCGCGGAACCAGTTTGCAGGCCAGAATCAATGCACGAGTACAACCTCACTCCGCATTCTTTGTATGCTGCGGTTTCTGTCGGTCTGGAGACAGATACAATTATCGCAGTTCTTAGTAAGTTATCAAAGGCTAAACTCCCCAAAGAGATGATTGATTTCATTTATGCTTCTACTTCCAACTATGGCAAGGTGAAGCTTGTCCTTAAAAAGAACCGATATCTCGTGGAATCTCCATTTCCAGAGGTGTTGCAGAAACTGCTCAGGGATGAGGTTATAGGCAGAGCCAGAATCATTCACGAGGATTCTCATGGAAATGGCGAGTTTACAATTAGCAAGACAGCAGGTGAACTTGGCAATCGCCATGAAGGATTGCTCAACGAGGCAGAAGCTGCAGCTGCAGCTGAGGAAAGAGAAACTCATTCATTTGAAATTGACCCAGCACAAGTTGAAAATGTTAAACAACGCTGCTTGCCCAATGCCTTAAATTATCCCATGTTGGAAGAGTACGACTTCAGAAATGACACTATCAATCCAGACTTGGATATGGAACTGAAGCCACAGGCTCAACCAAGGCCCTATCAGGAAAAGAGTCTTAGTAAAATGTTTGGAAATGGTAGAGCAAGATCTGGCATTATTGTACTTCCTTGTGGAGCCGGAAAGTCTCTAGTTGGTGTTTCTGCAGCCAGTCGTATCCGGAAAAGTTGTCTGTGTTTAGCTACAAATGCTGTATCAGTGGATCAGTGGGCTTTTCAGTTTAAGTTGTGGTCTACCATTCGGGATGATCAAATTTGTCGTTTCACATCAGATAGTAAAGAAAGATTTCGAGGTAATGCTGGGGTGGTTGTTACAACCTATAACATGGTTGCTTTTGGTGGTAAAAGATCTGAAGAATCTGAAAAGATTATTGAAGAGATAAGAAATAGAGAATGGGGGCTACTTCTCATGGACGAGGTGCATGTGGTTCCTGCTCACATGTTTCGTAAGGTCATCAGCCTGACTAAGTCTCACTGCAAGCTTGGGCTCACTGCCACACTTGTCAGAGAAGATGAAAGAATTACAGATTTAAATTTCCTTATTGGTCCCAAGTTGTATGAAGCCAACTGGTTGGATCTTGTGAAAGGAGGATTTATTGCAAATGTGCAGTGTGCTGAAGTTTGGTGCCCTATGACAAAGGAATTTTTTGCTGAATATCTGAAGAAAGAAAACTCAAAGAAAAAGCAGGCTCTTTATGTAATGAACCCCAACAAGTTCAGGGCGTGTGAGTTTCTCATACGGTTTCATGAACAGCAGCGTGGTGATAAGATAATAGTCTTTGCTGACAATCTTTTTGCACTTACGGAGTATGCAATGAAGCTTCGTAAACCTATGATCTATGGTGCAACAAGTCATCTTGAGAGGACAAAAATTCTTGAAGCATTCAAAACTAGTCGTGACGTGAATACTGTTTTTCTCTCAAAGGTCGGTGATAACTCTATAGATATTCCCGAGGCAAATGTGATTATTCAGATTTCATCACATGCGGGTTCAAGACGTCAAGAAGCCCAACGTCTGGGACGTATTCTTAGGGCGAAGGGTAAACTTCAGGACAGGATGGCTGGGGGTAAAGAGGAGTATAATGCCTTTTTCTATTCACTTGTTTCTACTGATACACAGGAAATGTACTATTCAACTAAACGACAACAGTTTTTGATCGATCAAGGTTATAGCTTTAAGGTAATTACAAGCTTGCCACCAGCGGATGCAGGAGCTGATTTGAGCTATCATCGTCTTGATGATCAGTTGGCACTTCTCGGGAAGGTATTGAATGCAGGCGACGATATGGTAGGATTGGAGCAGTTAGAAGATGATACAGACCAAATTGCACTTGATAAGGCTCGCCGAATGACCGGGTCCATGAGCGCAATGTCGGGAGCAAACGGAATGGTTTACATGGAGTACAGCACTGGACGAAAACTCGCGGGTCAAGGGCAGATGAAGAGCAAGCCAAAAGACCCGGCGAAGAGACATCATTTGTTCAAAAAGCGGTTTGCCTGA 2310 42.94 MGHGDKGRSSKRPKFGKEDYKKAHFEEEDAYHFEEFDDDDRNGDKEGGKRDFSKLELKPDHTNRPLWACSDGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETDTIIAVLSKLSKAKLPKEMIDFIYASTSNYGKVKLVLKKNRYLVESPFPEVLQKLLRDEVIGRARIIHEDSHGNGEFTISKTAGELGNRHEGLLNEAEAAAAAEERETHSFEIDPAQVENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHLERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPADAGADLSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDTDQIALDKARRMTGSMSAMSGANGMVYMEYSTGRKLAGQGQMKSKPKDPAKRHHLFKKRFA 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7869818 7877626 + CmaCh15G012410.1 Cma15g01241 310391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01241 769 SMART helicmild6 538 616 IPR001650 -
Cma15g01241 769 MobiDBLite consensus disorder prediction 746 769 - -
Cma15g01241 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 391 705 IPR027417 -
Cma15g01241 769 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 293 455 IPR014001 -
Cma15g01241 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 457 IPR027417 -
Cma15g01241 769 SMART ultradead3 278 459 IPR014001 -
Cma15g01241 769 Pfam ERCC3/RAD25/XPB C-terminal helicase 463 711 IPR032438 -
Cma15g01241 769 Gene3D - 272 463 IPR027417 -
Cma15g01241 769 PRINTS Xeroderma pigmentosum group B protein signature 64 84 - -
Cma15g01241 769 PRINTS Xeroderma pigmentosum group B protein signature 150 169 - -
Cma15g01241 769 PRINTS Xeroderma pigmentosum group B protein signature 263 289 - -
Cma15g01241 769 PRINTS Xeroderma pigmentosum group B protein signature 294 316 - -
Cma15g01241 769 PRINTS Xeroderma pigmentosum group B protein signature 401 421 - -
Cma15g01241 769 PRINTS Xeroderma pigmentosum group B protein signature 467 489 - -
Cma15g01241 769 PRINTS Xeroderma pigmentosum group B protein signature 505 520 - -
Cma15g01241 769 PRINTS Xeroderma pigmentosum group B protein signature 525 547 - -
Cma15g01241 769 PRINTS Xeroderma pigmentosum group B protein signature 572 590 - -
Cma15g01241 769 PRINTS Xeroderma pigmentosum group B protein signature 591 616 - -
Cma15g01241 769 PRINTS Xeroderma pigmentosum group B protein signature 628 651 - -
Cma15g01241 769 PRINTS Xeroderma pigmentosum group B protein signature 719 738 - -
Cma15g01241 769 MobiDBLite consensus disorder prediction 33 56 - -
Cma15g01241 769 CDD DEXHc_XPB 274 443 - -
Cma15g01241 769 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 510 676 IPR001650 -
Cma15g01241 769 MobiDBLite consensus disorder prediction 755 769 - -
Cma15g01241 769 PANTHER RAD25/XP-B DNA REPAIR HELICASE 5 768 - -
Cma15g01241 769 MobiDBLite consensus disorder prediction 1 21 - -
Cma15g01241 769 Pfam Helicase conserved C-terminal domain 66 189 IPR032830 -
Cma15g01241 769 PANTHER DNA REPAIR HELICASE XPB1-LIKE 5 768 - -
Cma15g01241 769 CDD SF2_C_XPB 474 638 - -
Cma15g01241 769 Gene3D - 464 704 IPR027417 -
Cma15g01241 769 TIGRFAM rad25: DNA repair helicase rad25 51 766 IPR001161 GO:0003678|GO:0006289|GO:0006367
Cma15g01241 769 Pfam Type III restriction enzyme, res subunit 281 437 IPR006935 GO:0003677|GO:0005524|GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01241 K10843 ERCC3, XPB; DNA excision repair protein ERCC-3 [EC:5.6.2.4] - csv:101215293 1469.91
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g19 . . . . . . . Bma14g00606 . . . Cma15g01241 . Car15g01118 . . . . . . . . . . . . . . . . . Cone8ag0288 Cone12ag0294 . . . Csa05g00262 Chy09g01245 . . . . . . Bpe11g00661 . . . . Cmo15g01306 . . . . . Cpe13g00144 Bhi12g00288 . . Lac11g2069 Hepe06g1526 . Lcy12g1631 Cla01g00247 Cam01g0251 Cec01g0244 Cco01g0257 Clacu01g0249 Cmu01g0239 Cre09g2269 Lsi09g00237 . . Cme09g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011686 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01241 Cma_Chr15 FPKM 9.641746 9.525029 13.187939 13.86934 10.14896 10.085578 9.859907 19.650879 16.89204 18.52356