Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01244 ATGGCTGGAGAAGACAAATCAAACGAGATGGTAGTTGGTGGATTTTATTACAATTCCATCCAGATCCAACCCGGATTTGGATCCAGCACCGAACCGGCGGAGATGTTCAATTTGCAAGTGAACAACGAGTTCGGCGGCGGCGGCGGTGGTGGTGATGATGAGTTTCATCACCACTTGATGGTGGTTGGGCCTTGGGGGACGACGGCGGGGGCGGCGGAGGCGGCGGATTCGTCGTTGAGATGTGTGTTTCCATGTGAAGCAAACGAAAGACCAAGCCATGGCCTTTCTTTGTCTCTTAGTTCCACTAATCCTTCTTCTATTGGGTTACAATCCTTTGAACTAAGAACCCAACAATCATCTTCGGCCATTTTTCAGCTTCGAAACTCCAAATTCTTGGCCCCAACTCAAGAGCTTCTTTATGAGTTTTGTAGCCTTGAAATCACCAATGATATGAACAATAGGCACCAAAACCAAGCCATTTCTTCTACCAACTCCTCTCTTCAATCGCTTGATTTCATGGAATTGCAAAAGAGAAAAACCAAGCTTTTTTCCTTGCTTGAAGAGGTTGAAAGAAGGTATAAGCATTATTGCGAGCAAATGAAGGCGGTGGTGGCGTCGTTTGAAGCGGTGGCCGGGAATGGGGTGGCGAGGGTGTACTCGGCGTTGGCATCAAAAGCGATGTCGAAGCATTTTAGGAGCCTAAAAGATGGAATTGTGGGGCAAATTCAAGCCACAAAAAAGGCAATGGGAGAAAAGGATCCAATTGCACCTGGTACCACAAGAGGAGAAACGCCAAGGCTTAGAGTGATTGATCAGGCCTTAAGGCAACAAAGAGCTTTCCATCAAATCAGCATCATGGAAAGCCATCCTTGGCGCCCTCAACGTGGCCTCCCCGAGAGTTCTGTCTCGATTCTTCGTGCTTGGCTTTTCGAACACTTTCTTCACCCATATCCTAGCGATGTGGATAAACACATTTTAGCTCGCCAAACTGGTCTCTCAAGAAGCCAGGTGTCGAATTGGTTCATTAATGCGAGGGTGAGGCTGTGGAAGCCAATGGTGGAGGAGATGTATTTAGAGGAAACAAAGGAACAAGTAGAAGAAATTGATAACACCAACTTCAACAACATGAACAACAATGGCAACAACTCTTTCCACGGGATGATGGATTTCGACGATGAGATCGACGGTCAACGATCGATCCCGACGGGGGTGGAGGATCGGAAGCCGACGTCGGACCAACTTCTAAAAATAGATTCGGAAGGTCTCTCTTCAATCATCTCTAATAGCTCGGAGAAGAATGATTCAAGAGCCATGAAAGCCATGCAAAACTATCAAGGGCAACATGTCCATAACAACCATAACCATAACTTTGGGCGGATCGCTGCTGATGCATTCGACATGGTGGAGCTCAACTTCTCGTCCTACAACCACGATAGCGGCGGAGTTTCCTCGTACCTCAACAACAACAACAATCAACATTTCAACAACGGGAATAGTAGCAGTGTGTCGTTGACATTAGGGTTACAACAGCATGCAGCAGGCGGGAGGAACATCAGCGAAGGTGTGAGCATCGCCTTCTCACCAGTAGCGGCGGCTGCAGCAGCGACTCAAAGCTCCATTTTCTTCACAAGAGATCATATAGAAGAATGCCAACCAGTTCAATATTCTGTTTTAGATGGAGAAACGACTCAGAATCTTCCTTATAGAAATTTGATGGGTACTCAATTGCTTCATGATTTGGCCGGGTAA 1749 46.88 MAGEDKSNEMVVGGFYYNSIQIQPGFGSSTEPAEMFNLQVNNEFGGGGGGGDDEFHHHLMVVGPWGTTAGAAEAADSSLRCVFPCEANERPSHGLSLSLSSTNPSSIGLQSFELRTQQSSSAIFQLRNSKFLAPTQELLYEFCSLEITNDMNNRHQNQAISSTNSSLQSLDFMELQKRKTKLFSLLEEVERRYKHYCEQMKAVVASFEAVAGNGVARVYSALASKAMSKHFRSLKDGIVGQIQATKKAMGEKDPIAPGTTRGETPRLRVIDQALRQQRAFHQISIMESHPWRPQRGLPESSVSILRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEQVEEIDNTNFNNMNNNGNNSFHGMMDFDDEIDGQRSIPTGVEDRKPTSDQLLKIDSEGLSSIISNSSEKNDSRAMKAMQNYQGQHVHNNHNHNFGRIAADAFDMVELNFSSYNHDSGGVSSYLNNNNNQHFNNGNSSSVSLTLGLQQHAAGGRNISEGVSIAFSPVAAAAAATQSSIFFTRDHIEECQPVQYSVLDGETTQNLPYRNLMGTQLLHDLAG 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7909711 7911923 + CmaCh15G012440.1 Cma15g01244 310394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01244 582 SMART HOX_1 291 355 IPR001356 GO:0003677
Cma15g01244 582 CDD homeodomain 291 352 IPR001356 GO:0003677
Cma15g01244 582 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 73 524 - -
Cma15g01244 582 Coils Coil 172 192 - -
Cma15g01244 582 SUPERFAMILY Homeodomain-like 292 357 IPR009057 -
Cma15g01244 582 Pfam Associated with HOX 126 238 IPR006563 -
Cma15g01244 582 SMART prehox3 120 240 IPR006563 -
Cma15g01244 582 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 73 524 - -
Cma15g01244 582 Pfam Homeobox KN domain 308 347 IPR008422 GO:0003677|GO:0006355
Cma15g01244 582 Gene3D - 294 356 - -
Cma15g01244 582 ProSiteProfiles 'Homeobox' domain profile. 288 351 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01431 Cma15g01244 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01027 Cma-Chr3:7153378 Cma15g01244 Cma-Chr15:7909711 6.51E-91 dispersed
Cma15g01244 Cma-Chr15:7909711 Cma20g01145 Cma-Chr20:9080279 2.32E-97 dispersed
Cma15g01244 Cma-Chr15:7909711 Cma02g01431 Cma-Chr2:8246912 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36478 PF07526 POX 3.70E-38 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01244 - - cmo:103482774 814.298