Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01248 ATGGCTACTAAAGAGTCCAGCTCTGCGGCTGCCACTGAGGGGAAGATTAAAGGGGTTCTTACCCATGGCGGCCGATATGTTCAGTATAATGTTTATGGTAACTTGTTTGAGGTTTCTGCTAAGTATGTTCCTCCTTTGCGACCCATTGGTAGAGGTGCTTATGGTCTTGTTTGTGCTGCTGTAAATTCTGAGACACATGAAGAGGTTGCCATCAAGAAAATTGGGAATGCTTTTGATAACATAATCGATGCCAAGAGGACATTGAGAGAAATTAAGCTTCTTTGCCACATGGAACATGAAAATATTATAGCCATCAGAGACATCATTCGGCCACCAAAAAGAGAGGTTTTTAATGATGTTTATATCGTTTACGAATTGATGGACACTGATCTTCATCAAATAATTCGTTCTGACCAATCACTGACCGACGATCATTGCCAGTACTTTTTGTATCAGTTATTGCGTGGGCTGAAGTATGTACATTCAGCCAAGGTCCTGCACCGTGATCTCAAGCCAAGCAACCTGCTTCTGAATGCAAATTGCGACCTTAAAATTGGCGATTTTGGATTAGCAAGAACGACTTCTGAAACCGACTTCATGACTGAATATGTGGTTACTCGTTGGTACCGAGCACCGGAATTGCTGCTCAATTGTTCGGAGTACACTGCTGCTATCGATGTTTGGTCTGTCGGATGCATTCTTGGTGAGATCATGACCAGAGAACCTCTCTTCCCTGGAAAAGATTATGTTCATCAACTCAGACTTATAACTGAGCTACTAGGATCACCGGATGACGCCAGCCTAGGATTTCTCCGAAGCGATAATGCTCGAAGATACGTCAAGCAGCTTCCACAGTACAGGAAACAACAATTCTCAGCTAGATTTCCCAACATGTCTCCAGCTGCTCTTGATCTTCTAGAAAAGATGCTCGTATTCGATCCAAACAAACGCATTACAGTGGAGGAGGCACTTTGTCATCCATACTTGCAATCTCTTCACGACATCAACGACGAGCCACTCTGTGTCAGGCCCTTCAGTTTCGATTTCGAGCAACCGTCGTGCACTGAAGAGCATATTAAAGAACTCATCTGGAAAGAATCCGTTCGGTTCAACCCCGACGAATCAGGCAGAAGGACGACTCTTTGCGTCTAA 1152 44.1 MATKESSSAAATEGKIKGVLTHGGRYVQYNVYGNLFEVSAKYVPPLRPIGRGAYGLVCAAVNSETHEEVAIKKIGNAFDNIIDAKRTLREIKLLCHMEHENIIAIRDIIRPPKREVFNDVYIVYELMDTDLHQIIRSDQSLTDDHCQYFLYQLLRGLKYVHSAKVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDVWSVGCILGEIMTREPLFPGKDYVHQLRLITELLGSPDDASLGFLRSDNARRYVKQLPQYRKQQFSARFPNMSPAALDLLEKMLVFDPNKRITVEEALCHPYLQSLHDINDEPLCVRPFSFDFEQPSCTEEHIKELIWKESVRFNPDESGRRTTLCV 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7927658 7932191 - CmaCh15G012480.1 Cma15g01248 310398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01248 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Cma15g01248 383 Gene3D Phosphorylase Kinase; domain 1 26 366 - -
Cma15g01248 383 ProSiteProfiles Protein kinase domain profile. 43 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g01248 383 SMART serkin_6 43 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g01248 383 SUPERFAMILY Protein kinase-like (PK-like) 46 337 IPR011009 -
Cma15g01248 383 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 18 374 - -
Cma15g01248 383 Pfam Protein kinase domain 47 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g01248 383 CDD STKc_TEY_MAPK 36 372 - -
Cma15g01248 383 Gene3D Transferase(Phosphotransferase) domain 1 127 356 - -
Cma15g01248 383 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED 18 374 - -
Cma15g01248 383 ProSitePatterns MAP kinase signature. 78 181 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cma15g01248 383 ProSitePatterns Protein kinases ATP-binding region signature. 49 73 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01429 Cma15g01248 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00554 Cma-Chr1:2885039 Cma15g01248 Cma-Chr15:7927658 5.13E-140 dispersed
Cma05g00431 Cma-Chr5:1956044 Cma15g01248 Cma-Chr15:7927658 0 dispersed
Cma08g00890 Cma-Chr8:5512522 Cma15g01248 Cma-Chr15:7927658 0 dispersed
Cma12g00088 Cma-Chr12:338930 Cma15g01248 Cma-Chr15:7927658 0 dispersed
Cma13g00166 Cma-Chr13:1268019 Cma15g01248 Cma-Chr15:7927658 0 dispersed
Cma15g01248 Cma-Chr15:7927658 Cma17g00451 Cma-Chr17:2685984 0 dispersed
Cma16g00631 Cma-Chr16:3258541 Cma15g01248 Cma-Chr15:7927658 3.52E-146 dispersed
Cma15g01248 Cma-Chr15:7927658 Cma02g01429 Cma-Chr2:8238896 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69160 PF00069 Pkinase 4.30E-71 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01248 - - csv:101214254 761.911