Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01251 ATGTTTCCAGTTCGTAGATTGATGATGACAGCTGCATCGAATTCTGTGTCGCTGAAGCACGGCCTCTCTCTCTGGTGTCCGCACTCTGGTTCCTTTTCTAGAGCTCAGCCAAAATCTTCTGTTTCTTTCAGATCTTTCCAGAGAAGCTACGTTGTTGCCTCCTCGGCTTTCGCTAACGAGAATAGAGAGTTTGTGATTGTTGGTGGTGGCAATGCTGCTGGTTATGCGGCTCGTACTTTCGTCGAGCACGGGATGGCGGATGGACGACTTTGTATAGTAACTAAGGAGGCAGTTGCACCGTACGAGCGTCCGGCTCTGACAAAAGGTTACTTGTTTCCTCTTGATAAAAAACCAGCTCGCTTGCCTGGGTTTCATACTTGTGTTGGATCTGGTGGGGAAAGACAAACGCCAGAGTGGTACAAGGATAAAGGTATTGAGACGTTTTATCAAGATCCAGTTATGGGTATCGACATAGAAAACCAAACACTGAAAACTAATTCAGGAAAACTGCTCAAGTATGGAGCGCTTTTAATAGCAACAGGATGTACAGCCTCGAGATTTCCAGATAGAATTGGTGGTGGGCTACCGGGTGTTCACTACGTCCGAGATGTTGCAGATGCAGATTCACTAATTTCCTCATTGGAGAAAGCAAAAAAGGTGGTTATTGTTGGTGGTGGTTACATTGGTATGGAGGTCGCTGCGGCAGCTGTTGGTTGGAAACTTGATACAACAATCATATTTCCCGAGAATCACCTATTGCAACGACTTTTTACTCCTTCGCTGGCCAGGAAATATGAAGAATTTTACCAGGAGAATGGTGTCAAATTCTTAAAGGGGGCCTCCATAAAAAATTTGGAAGCTGGTGCAGATGGTCGGGTCTCTTCTGTTAGACTTGAGGATGGATCCTCCATTGAAGCAGACACGGTAGTAATAGGCATTGGTGCGAAGCCTGCTGTCAGTCCGTTTGAGCAAGTGGGATTGAATAGCAATGTTGGCGGCATACAGGTTGATGGCATGTTCAGAACTAAGATACCAGGAATTTTTGCAGTTGGAGATGTGGCAGCATTCCCGTTAAAGCTGTATGATCGTGTAACTCGGGTCGAACATGTGGATCATGCTCGTCGATCGGCTCAGCATTGTGTCAAATCCTTACTAACTGCTCATACTCAAATATACGATTATCTTCCATATTTCTACTCAAGGGTGTTTGAATACGAAGGGAGCCCTAGGAAAATATGGTGGCAATTTTTTGGGGATAATGTTGGCGAGACAGTCGAAATTGGGAACTTTGATCCTAAGATTGCTACTTTTTGGATTGATTCTGGTAAATTAAAAGGGGTTCTTCTTGAAAGCGGAAGTCCGGAGGAATTTGAACTCCTTCCTAAACTTGCAAGATTCCAACCTTCTGTTGATAAAGCTAAGCTTCAAAGTGCGTCTTCAGTCGAGGAAGCACTGGATATTGCCCGAGAATCCTTGCAACAGACTGGAGCTTCGGTACTTTGA 1503 44.91 MFPVRRLMMTAASNSVSLKHGLSLWCPHSGSFSRAQPKSSVSFRSFQRSYVVASSAFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVTKEAVAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKDKGIETFYQDPVMGIDIENQTLKTNSGKLLKYGALLIATGCTASRFPDRIGGGLPGVHYVRDVADADSLISSLEKAKKVVIVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLARKYEEFYQENGVKFLKGASIKNLEAGADGRVSSVRLEDGSSIEADTVVIGIGAKPAVSPFEQVGLNSNVGGIQVDGMFRTKIPGIFAVGDVAAFPLKLYDRVTRVEHVDHARRSAQHCVKSLLTAHTQIYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIGNFDPKIATFWIDSGKLKGVLLESGSPEEFELLPKLARFQPSVDKAKLQSASSVEEALDIARESLQQTGASVL 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7936689 7943346 + CmaCh15G012510.1 Cma15g01251 310401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01251 500 PANTHER MONODEHYDROASCORBATE REDUCTASE, CHLOROPLASTIC/MITOCHONDRIAL 12 495 - -
Cma15g01251 500 SUPERFAMILY FAD/NAD(P)-binding domain 63 406 IPR036188 -
Cma15g01251 500 PRINTS FAD-dependent pyridine nucleotide reductase signature 65 84 - -
Cma15g01251 500 PRINTS FAD-dependent pyridine nucleotide reductase signature 219 237 - -
Cma15g01251 500 PRINTS FAD-dependent pyridine nucleotide reductase signature 332 354 - -
Cma15g01251 500 PRINTS FAD-dependent pyridine nucleotide reductase signature 306 322 - -
Cma15g01251 500 PRINTS FAD-dependent pyridine nucleotide reductase signature 173 191 - -
Cma15g01251 500 Pfam Pyridine nucleotide-disulphide oxidoreductase 64 377 IPR023753 GO:0016491
Cma15g01251 500 Gene3D - 65 380 IPR036188 -
Cma15g01251 500 Gene3D - 397 484 IPR016156 GO:0016491|GO:0050660
Cma15g01251 500 Gene3D - 187 314 IPR036188 -
Cma15g01251 500 PRINTS Pyridine nucleotide disulphide reductase class-I signature 347 354 - -
Cma15g01251 500 PRINTS Pyridine nucleotide disulphide reductase class-I signature 63 85 - -
Cma15g01251 500 PRINTS Pyridine nucleotide disulphide reductase class-I signature 219 244 - -
Cma15g01251 500 PRINTS Pyridine nucleotide disulphide reductase class-I signature 307 321 - -
Cma15g01251 500 PANTHER APOPTOSIS-INDUCING FACTOR 1 12 495 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01251 K08232 E1.6.5.4; monodehydroascorbate reductase (NADH) [EC:1.6.5.4] - csv:101214011 903.279
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01251 Cma-Chr15:7936689 Cma14g00295 Cma-Chr14:1283923 4.11E-107 dispersed
Cma15g01251 Cma-Chr15:7936689 Cma04g02701 Cma-Chr4:18262232 3.48E-121 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g38 . . . . . . . Bma14g00599 . . . Cma15g01251 . Car15g01128 . . . . . . . . . . . . . . . . . . . Cone6ag0808 Cone9ag0805 . Csa05g00247 Chy09g01259 . . . . . . Bpe11g00669 . . . . Cmo15g01316 . . . . . Cpe13g00134 Bhi12g00305 . . . . . . Cla01g00231 . Cec01g0229 Cco01g0243 Clacu01g0234 Cmu01g0227 Cre09g2283 Lsi09g00223 . . Cme09g01794
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008344 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01251 Cma_Chr15 FPKM 173.643204 176.609161 86.909714 91.792061 44.146854 39.490559 46.178036 71.195496 69.555687 79.903145