Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01263 ATGGAAGCTCTGTGGATTATCAGCTTCGTTTTGGTTCTGGGGTTGGTTTTTTCCCCAAGTAATGGCGACCCAGTTCAAGATAAGCGAGCTTTGCTTGATTTTGTCAAGAAGCTTCCTCACTCTCGCTCTCTTAATTGGAATGTGACTTCTCCGGTTTGCCATTACTGGACTGGTATAACTTGCAGTGATGATGAATCTCGTGTTATAGCCGTTCGATTGCCCGGAGTTGGCTTCCACGGCCCGATTCCGGCGAACACTCTCAGCCGGCTCACGGGGCTGCAAATTTTGAGTCTCAGATCCAATCGTATAACAGGGGATTTCCCTTCGGATTTCTCTAATCTTAGTAACTTGTCTTATCTTTATCTTCAGTTCAATAACTTCTCTGGGCCATTGCCTTCAAACTTCTCTGTCTGGAAGAATCTCACCTTTGTGAACCTCTCTAACAATGGCTTCAATGGCAGCATACCCTTTTCACTTTCTAATATGACAGAGCTTACTGGTTTGAATTTGGCAAACAACTCTCTCTCAGGGGAAATCCCTGACCTCCAAATGCCCAAATTGCAGATTCTGAATTTATCCAACAACAATTTGAGTGGGAGTTTGCCTAAATCTTTACAGAGATTTCCAAGTTCTTCATTTCTAGGCAATAACATATCCTTCGAAAGTTCTTCACTGAACAATCCTCCCGTGCCACCGACGTTGCTCGTGTCGAATGATAAGCCGAAGAATTCTAAAGGGCTTAGAGAAGCAGCATTGTTAGGAATCATAATTGCTGGCGGTCTTTTGGGGCTTCTGGCTTTTGGCTTTCTAATACTTGTTTGCTTCTCGAGAAGGAAGAGTGAGGACGACGAGTATTCTGGGGATCGGCAGAAAGGTCGAATGTCGCCGGAGAAGGTGATATCAAGGACTCAAGATGCAAATAACAGATTGGTTTTCTTTGAGGGCTGCCATTATGCTTTTGATTTGGAGGATTTATTGAGGGCTTCTGCTGAGGTTTTGGGGAAGGGAACTTTTGGGACTGCTTATAAAGCAATTCTGGAGGATGCTACTACTGTTGTTGTTAAGAGGTTGAAGGATGTTAACGCCGGGAAGCGCGATTTCGAGCAGCAAATGGAGATTGTTGGCGGTATCAGGCATGAGAATGTGGTTGAGTTGAAGGCTTACTATTATTCCAAAGATGAGAAGCTGATGGTTTATGATTTCTTTACTCAGGGAAGCGTCTCGGCTATGTTGCACGGTAAACGTGGAGAGGAAAAGACACCGTTAGATTGGGACAGCAGACTGAGAATTGCAGTAGGTGCAGCACGAGGAATTGCCCGTGTCCATGCCGAAAATGGAGGGAAGCTCGTCCATGGAAATGTAAAATCCTCAAACATCTTTCTGAACTCTCGACAGTACGGATGTGTGTCTGATCTTGGACTAGCAACCATAACAAGCTCGCTCGCTCCACCTATATCCCGTGCTGCTGGTTACCGAGCCCCGGAAGTGACAGACACCCGCAAGGCCACACAGGCATCAGATGTTTTCAGCTTCGGCGTCGTGCTCCTCGAGCTTCTAACCGGAAAGTCCCCGATACATGCCACAGGTGGCGAAGAAATCGTGCACTTGGTTAGATGGGTTCATTCAGTTGTCCGTGAGGAGTGGACAGCTGAGGTATTTGATGTAGAGCTGATGAGGCAAAACAACAAACACGCAGGAGGATCTCAAGAGATTCCACTCTTTTGGATTTTGGTGATGGCTTCGAAGCGGATCTTGAAAGAGCTCAAGGATCTCCAGAAAGATCCTCCTACGTCTTGCAGTGCAGGCCCAGTAGCTGAAGACATGTTCCATTGGCAAGCAACAATAATGGGTCCTCCTGACAGTCCATATGCAGGAGGAGTGTTTCTTGTCAACATTCATTTCCCTCCAGATTATCCATTTAAACCACCCAAGGTTGCATTCAGAACAAAGGTCTTCCATCCCAATATCAACAGCAACGGCAGCATATGCCTTGACATACTTAAGGAACAGTGGAGTCCTGCACTAACCATTTCCAAGGTGTTACTTTCGATCTGCTCGCTGCTAACAGACCCGAATCCTGATGACCCTTTGGTGCCAGAGATCGCGCACATGTACAAGACTGACAGAAGCAAGTACGAGGCAACTGCGAGAAGCTGGACCCAGAAGTATGCTATGGGGTAG 2181 46.54 MEALWIISFVLVLGLVFSPSNGDPVQDKRALLDFVKKLPHSRSLNWNVTSPVCHYWTGITCSDDESRVIAVRLPGVGFHGPIPANTLSRLTGLQILSLRSNRITGDFPSDFSNLSNLSYLYLQFNNFSGPLPSNFSVWKNLTFVNLSNNGFNGSIPFSLSNMTELTGLNLANNSLSGEIPDLQMPKLQILNLSNNNLSGSLPKSLQRFPSSSFLGNNISFESSSLNNPPVPPTLLVSNDKPKNSKGLREAALLGIIIAGGLLGLLAFGFLILVCFSRRKSEDDEYSGDRQKGRMSPEKVISRTQDANNRLVFFEGCHYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKDVNAGKRDFEQQMEIVGGIRHENVVELKAYYYSKDEKLMVYDFFTQGSVSAMLHGKRGEEKTPLDWDSRLRIAVGAARGIARVHAENGGKLVHGNVKSSNIFLNSRQYGCVSDLGLATITSSLAPPISRAAGYRAPEVTDTRKATQASDVFSFGVVLLELLTGKSPIHATGGEEIVHLVRWVHSVVREEWTAEVFDVELMRQNNKHAGGSQEIPLFWILVMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8026674 8037258 + CmaCh15G012630.1 Cma15g01263 310413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01263 726 Gene3D Ribonuclease Inhibitor 26 139 IPR032675 -
Cma15g01263 726 Pfam Ubiquitin-conjugating enzyme 583 719 IPR000608 -
Cma15g01263 726 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Cma15g01263 726 Pfam Protein kinase domain 330 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g01263 726 SMART ubc_7 582 725 - -
Cma15g01263 726 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 579 725 IPR000608 -
Cma15g01263 726 SUPERFAMILY Protein kinase-like (PK-like) 331 550 IPR011009 -
Cma15g01263 726 SUPERFAMILY UBC-like 575 725 IPR016135 -
Cma15g01263 726 Gene3D Ribonuclease Inhibitor 140 229 IPR032675 -
Cma15g01263 726 CDD UBCc 581 720 IPR000608 -
Cma15g01263 726 Gene3D Phosphorylase Kinase; domain 1 294 401 - -
Cma15g01263 726 Gene3D Ubiquitin Conjugating Enzyme 585 726 IPR016135 -
Cma15g01263 726 SUPERFAMILY L domain-like 37 212 - -
Cma15g01263 726 Pfam Leucine rich repeat 82 127 IPR001611 GO:0005515
Cma15g01263 726 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Cma15g01263 726 ProSiteProfiles Protein kinase domain profile. 327 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g01263 726 Gene3D Transferase(Phosphotransferase) domain 1 404 584 - -
Cma15g01263 726 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 652 667 IPR023313 -
Cma15g01263 726 PANTHER OS05G0588300 PROTEIN 21 562 - -
Cma15g01263 726 PANTHER PROTEIN, PUTATIVE-RELATED 21 562 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01404 Cma15g01263 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00034 Cma-Chr10:123234 Cma15g01263 Cma-Chr15:8026674 3.71E-39 dispersed
Cma15g01263 Cma-Chr15:8026674 Cma16g00080 Cma-Chr16:351159 0 dispersed
Cma18g01293 Cma-Chr18:9962609 Cma15g01263 Cma-Chr15:8026674 1.45E-103 dispersed
Cma15g01263 Cma-Chr15:8026674 Cma16g00079 Cma-Chr16:347406 1.45E-103 wgd
Cma15g01263 Cma-Chr15:8026674 Cma18g01292 Cma-Chr18:9958632 0 wgd
Cma15g01263 Cma-Chr15:8026674 Cma02g01404 Cma-Chr2:8128944 2.63E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69161 PF00069 Pkinase 4.90E-31 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01263 - - cpep:111808460 1038.48