Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01277 ATGAACACGATGATGAACAGAACGGATCTTCAATTCCAGCTAACGGATGTTTCAACGGCTCTTTCGAATCTGATTCTAACAGGCGGAGGAAATACATTGGATTCGATCTTCTCTCACTGCGAGAATTTAACTTCTGTGAACGATGGCGGAGATTTTGTTCGGCCGGTGGGGTCGTCGGTGTATCTCCAGCAGCAGGAGGTATTGAAGAGATTTTCTGAAAACGATAAACCAAATGGGTCTCGGGATTTGTTTTCACGGGCGTATGAATTGCTATATTCGAGAAGCGGGGCTGCTGTGGGCGGCGGTGAGAGGAAGCTTTACAGAGGAGTGCGGCAGAGACATTGGGGGAAATGGGTGGCGGAGATTCGGCTGCCGCAGAATCGGATGAGGGTGTGGTTGGGAACCTATGATTCGCCGGAGGCTGCCGCGTACGCGTACGACTGTGCTGCTTGTAAGCTCCGGGGGGAATATGCGCGGTTGAATTTCCCGAATCTTAAGGAGCTGAAGACGGATTTGGGCGGCGGCGAGTTTGCGAGATTGAGTGGGTTGAAGAAATTGGTGGACGCCAAGATTCAAGCGATTTTTCAGAAGATTCGGAAGGGGAAAGGGAAGAAGAGTGTGAAGAAGAATGATTCTCACAGAACCGGCAGCGATTTGGGTTCCGGTTCGTGTTCTTCGTCGTCGTCGTCATCAGTGTCTCTGCCGCCTACGGCAGTGGAGTTGACGGATGAGTGGAGTTGGGAAAGGGTGCAGCCGCCGGTCGCGGCGGAAGAGGGTTTGTGGAACTTCGAGAACTCGCCTCGAGATGTCTCCACGGATTGTTCGACGGCGACGGCGGGATTAGAAACGGAGTGCTATTCATTGGCAAAGATGCCTTCCTATGACGCGGAGCTCATATGGGAAGTTCTTGCAAACTAG 918 52.29 MNTMMNRTDLQFQLTDVSTALSNLILTGGGNTLDSIFSHCENLTSVNDGGDFVRPVGSSVYLQQQEVLKRFSENDKPNGSRDLFSRAYELLYSRSGAAVGGGERKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDSPEAAAYAYDCAACKLRGEYARLNFPNLKELKTDLGGGEFARLSGLKKLVDAKIQAIFQKIRKGKGKKSVKKNDSHRTGSDLGSGSCSSSSSSSVSLPPTAVELTDEWSWERVQPPVAAEEGLWNFENSPRDVSTDCSTATAGLETECYSLAKMPSYDAELIWEVLAN 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8091619 8093049 - CmaCh15G012770.1 Cma15g01277 310427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01277 305 Gene3D AP2/ERF domain 106 164 IPR036955 GO:0003700|GO:0006355
Cma15g01277 305 MobiDBLite consensus disorder prediction 202 236 - -
Cma15g01277 305 CDD AP2 105 165 IPR001471 GO:0003700|GO:0006355
Cma15g01277 305 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Cma15g01277 305 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 5 305 - -
Cma15g01277 305 MobiDBLite consensus disorder prediction 216 236 - -
Cma15g01277 305 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Cma15g01277 305 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Cma15g01277 305 PRINTS Ethylene responsive element binding protein signature 145 165 IPR001471 GO:0003700|GO:0006355
Cma15g01277 305 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Cma15g01277 305 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 5 305 - -
Cma15g01277 305 SUPERFAMILY DNA-binding domain 106 163 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma15g01277 Cma16g00550 CCT
Cma02g00907 Cma15g01277 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01277 Cma-Chr15:8091619 Cma05g00489 Cma-Chr5:2317976 1.82E-34 dispersed
Cma15g01277 Cma-Chr15:8091619 Cma16g00550 Cma-Chr16:2831656 2.80E-60 wgd
Cma15g01277 Cma-Chr15:8091619 Cma02g00907 Cma-Chr2:5406104 5.14E-132 wgd
Cma15g01277 Cma-Chr15:8091619 Cma04g00697 Cma-Chr4:3537107 7.28E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36480 PF00847 AP2 7.30E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01277 - - csv:101209624 454.136