Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01280 ATGCTCCATTCCATCAAGTACCTCGCCGGCTCCCCTGGCCCCTCCGGCTTCGGCTCCAAATCCTCCGCCGAACACGTCACCGCCTCCGCCCTCCACCTCCCTTCCATCACCGCCATCATCACCGGCGCAACGTCGGGGATTGGCGCGGAGACGGCGCGGGTTCTTGCGAAACGCGGAGCTCGGTTAATCCTCCCGTCGCGGAACCTGAAGGCGGCCGAGGAAGCCAAGGCGCGGATCGAAGCTGAATGCTCTGGTTCCGAAATCATCGCCATGGCTCTGGATTTAAGCTCTCTGGCCTCCGTTAGAACCTTCGTTGCCCAATTTGAATCGCTGAATCTCCCGCTTAATCTCCTCATAAACAACGCCGGGAAATTCTCTCACGAGCACGCGATTTCGGAGGACGGGATCGAGATGACCTTCGCCACTAATTATTTGGGTCATTTTTTATTGACCAAATTGTTGGTGAATACGATGGTGGAGACGGCGAAGGCGACGGGGATTCAGGGGCGGATTGTGAACGTGTCGTCGAGCATTCACGGCTGGTTCTCCGGCGACATTATCAAATATCTCGGCCAGATAAGCCGAAATAAATGCAGGAATTACGATGCGACACGTGCGTACGCGCTCTCTAAGCTTGCGAACGTTCTGCACACCCACGAACTTGCTCGCAGATTGAAGAAAATGGGAGCTAATGTTACTGTGAATTGCGTTCATCCGGGAATCGTTAGAACTCGACTCACTAGAGATCGTGAAGGTTTCATTACAGATTTGGTGTTCTTTATAACTTCTAAACTGTTGAAGACAATCCCTCAGGCAGCGGCAACCACATGCTACGTGGCGGCAAACCCAAGACTGAGCAACGTCACCGGAAAATACTTCGCCGACTGCAACGAAGCCTCACCGTCGAAACTCGCCGCTAGTCTGACGGAAGCAGCCCGTCTCTGGTCCGCGTCGGAGATCATGGTCAACACAAATTCAAAACTCGTTTTTAATCCAAACAATGCCTTGGAATAA 1014 53.16 MLHSIKYLAGSPGPSGFGSKSSAEHVTASALHLPSITAIITGATSGIGAETARVLAKRGARLILPSRNLKAAEEAKARIEAECSGSEIIAMALDLSSLASVRTFVAQFESLNLPLNLLINNAGKFSHEHAISEDGIEMTFATNYLGHFLLTKLLVNTMVETAKATGIQGRIVNVSSSIHGWFSGDIIKYLGQISRNKCRNYDATRAYALSKLANVLHTHELARRLKKMGANVTVNCVHPGIVRTRLTRDREGFITDLVFFITSKLLKTIPQAAATTCYVAANPRLSNVTGKYFADCNEASPSKLAASLTEAARLWSASEIMVNTNSKLVFNPNNALE 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8115488 8118429 + CmaCh15G012800.1 Cma15g01280 310430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01280 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 113 124 IPR002347 -
Cma15g01280 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 177 IPR002347 -
Cma15g01280 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 207 226 IPR002347 -
Cma15g01280 337 CDD retinol-DH_like_SDR_c_like 37 315 - -
Cma15g01280 337 Gene3D - 26 327 - -
Cma15g01280 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 300 IPR036291 -
Cma15g01280 337 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Cma15g01280 337 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Cma15g01280 337 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Cma15g01280 337 PRINTS Glucose/ribitol dehydrogenase family signature 207 226 IPR002347 -
Cma15g01280 337 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
Cma15g01280 337 PANTHER MITOCHONDRIAL PYRUVATE CARRIER 4 327 - -
Cma15g01280 337 PANTHER RETINOL DEHYDROGENASE 4 327 - -
Cma15g01280 337 Pfam short chain dehydrogenase 37 177 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01280 - - - csv:101209698 541.191
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00593 Cma-Chr6:2868080 Cma15g01280 Cma-Chr15:8115488 1.93E-31 dispersed
Cma10g00111 Cma-Chr10:468567 Cma15g01280 Cma-Chr15:8115488 4.15E-112 dispersed
Cma13g00871 Cma-Chr13:7111999 Cma15g01280 Cma-Chr15:8115488 1.12E-106 dispersed
Cma15g01280 Cma-Chr15:8115488 Cma16g01224 Cma-Chr16:9262820 5.99E-149 dispersed
Cma15g01280 Cma-Chr15:8115488 Cma02g00912 Cma-Chr2:5439191 3.12E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g310 Blo02g01124 Blo03g00227 . Bda08g00502 Bpe05g00662 . . . . Cmo16g00644 . Cma15g01280 . Car15g01154 . Cpe14g00505 . . . . . . . . Cla07g00772 Cam07g0831 Cec07g0886 Cco07g0863 Clacu07g0808 Cmu07g0814 Cre07g1168 Cone8ag0615 . . Cone9ag0789 . Csa05g00120 Chy09g01373 Cme07g01630 . . . . . . Bma05g00836 . . . . . . . . . . Bhi12g00031 . . Lac11g0044 . . Lcy12g0041 Cla01g00106 Cam01g0105 Cec01g0106 Cco01g0107 Clacu01g0103 Cmu01g0104 Cre09g2402 Lsi09g00092 Csa04g00593 . Cme09g01920
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002525 1 2 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 2 2 1 3 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01280 Cma_Chr15 FPKM 9.116427 7.695334 1.834644 1.304834 1.518715 1.166472 1.111719 0.0 0.0 0.0