Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01291 ATGGCTTGCAATGGAGGAGATTCGTATACGCAATCTTGTGTTTCGACTCAAGGTAGTGGAAGAAATGATCTGTACACGGAGCTATGGAGAGCTTGTGCAGGTCCACTGGTTGATGTGCCCCGCGTTGATGAGAGAGTCTTCTATTTCCCTCAGGGGCATATGGAACAATTAGAGGCATCAACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTGTAATCTTTCCTCGAAGATTCTCTGTCGTGTAATTCATATTGAGCTGCTGGCAGATCATGAATCGGATGAGGTTTATGCACAAATAGCTTTGATGCCGGAATCAAATCAAAATGAGCCTAACAGCCTAGATCCATGTCCTCCTGAACCAGCTAGACCAGTTGTTCATTCGTTCTGCAAGGTTTTAACTGCTTCTGATACCAGCACTCATGGTGGGTTTTCTGTCCTCCGAAAACATGCTACTGAGTGCCTACCGCCTTTGGACATGACTCAGGCTACCCCAACTCAGGATCTGGTAGCCAAGGATCTTCATGGATACGAGTGGCGATTCAAGCATATTTTCAGAGGTCAGCCACGAAGGCATCTGTTAACAACTGGGTGGAGTACATTTGTTACTTCTAAGAGATTATCTGCTGGGGATTCCTTTGTATTCTTGAGGGGAGACAATGGAGAGTTGCATGTTGGGGTGAGGCGCCGTGCTCGACAGCAGAGCAGCATGCCATCATCTGTGATATCAAGTCAGAGCATGCACCTAGGAGTGCTAGCAACTGCGTCTCATGCTGTTACAACTCAAACCCGCTTTGTAGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGTCTGAATAAATACTTGGAAGCAGTCAATAACAAATTTTCTGTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCGGAGAGAAGGTTTTCAGGAACTATTATTGGAGCTACAGATATTTCACCTCATTGGCCTAATTCAAGTTGGAGATCACTAAGAGTTCAATGGGATGAACAAACATCTATTCTAAGACCCGACAGGGTATCGCCTTGGGATATAGAACCACTCACGTCTTCAGCAGTCACAGGTCTATCTCAACCGATTTCAAAAAACAAAAGGCCTCGACAATCAACTCCAGCTCATGATGGTGCTGATTTGCCTAAGCCAGCACTTTGGGATTCTGGATTGGCAGAGTCACATGATGGTAAACAGTCCAGTAATGCAGCTGAAAGCAGAAAAGGTGAAAATAATGAATTGTGTCACCACAGAGAGACAGATGCTATCAGTAACAGGACATGTGTATCAAGAACACAGGCTGATGGGACCTGGCTATCTTCTACCCAATCCAATAGTCATAAACACCCAGTAAATGACATGGCCCAGGATTATAAAACTGTCCCTGGCTGTGGTTGGTCTTTTCTGTCAGGACCTTCAACCTCTCATTTGGTTAAGTTACGTGATGAACAAATACTTGATTCCACTGAAAATGGGAGGAAAGGAGAAACAGTAGCTACTTGTAGATTGTTTGGTATTGATCTCAATCATTTGGCTAAACTTCCTGCTGAGAAAGCATCTTATCAACCAAGCAGTGTGTCTAGTGACACAGACGGGCGCAGCAGTACCTTGTCAGTAGCTCAGTCCGATCCAAAATCTGACAACTTGGAGGTCTCTGTAGAAAGAAAATCAGAACCATTACAAGCATCTCTGAAGGAGACTCAAAGCAATCAAAGTAGCTCAGCTAACACTAGAAGCCGCACCAAGGTTCACATGCATGGGATGGCCGTGGGTAGGGCAGTGGATTTAACCATCTTAGAAGGCTATGACCAACTAATAGATGAGCTTGAGAAGATGTTTGATGTTAGGGGTCAGCTGTGTGCTCGTGATAAGTGGGAGATTGTATATACTGACGATGAAGGGGATATGATGCTTGTTGGAGACGACCCATGGGAAGAATTTTGTAACATGGTGAGAAGAATTTTTATATGCTCTAGGGAGCAAGTGAAAAAGATGAGCTCAGGAAGCAAGCAGCTGACGTCAATAGAAGTCGAAGGGGCTGCCGTAATCCTCGACTCCCCTGCAGTTTGA 2088 44.59 MACNGGDSYTQSCVSTQGSGRNDLYTELWRACAGPLVDVPRVDERVFYFPQGHMEQLEASTNLELNKRIPLCNLSSKILCRVIHIELLADHESDEVYAQIALMPESNQNEPNSLDPCPPEPARPVVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLRGDNGELHVGVRRRARQQSSMPSSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNNKFSVGMRFNMSFEGEDSPERRFSGTIIGATDISPHWPNSSWRSLRVQWDEQTSILRPDRVSPWDIEPLTSSAVTGLSQPISKNKRPRQSTPAHDGADLPKPALWDSGLAESHDGKQSSNAAESRKGENNELCHHRETDAISNRTCVSRTQADGTWLSSTQSNSHKHPVNDMAQDYKTVPGCGWSFLSGPSTSHLVKLRDEQILDSTENGRKGETVATCRLFGIDLNHLAKLPAEKASYQPSSVSSDTDGRSSTLSVAQSDPKSDNLEVSVERKSEPLQASLKETQSNQSSSANTRSRTKVHMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLCARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKKMSSGSKQLTSIEVEGAAVILDSPAV 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8184046 8189454 - CmaCh15G012910.1 Cma15g01291 310441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01291 695 Gene3D - 290 363 - -
Cma15g01291 695 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Cma15g01291 695 MobiDBLite consensus disorder prediction 568 587 - -
Cma15g01291 695 CDD B3_DNA 127 229 IPR003340 GO:0003677
Cma15g01291 695 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 682 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma15g01291 695 ProSiteProfiles PB1 domain profile. 584 665 IPR000270 GO:0005515
Cma15g01291 695 SMART B3_2 129 231 IPR003340 GO:0003677
Cma15g01291 695 MobiDBLite consensus disorder prediction 525 590 - -
Cma15g01291 695 MobiDBLite consensus disorder prediction 363 419 - -
Cma15g01291 695 Gene3D - 126 231 IPR015300 -
Cma15g01291 695 SUPERFAMILY CAD & PB1 domains 575 660 - -
Cma15g01291 695 MobiDBLite consensus disorder prediction 526 553 - -
Cma15g01291 695 PANTHER AUXIN RESPONSE FACTOR 9 19 682 - -
Cma15g01291 695 Gene3D - 579 672 - -
Cma15g01291 695 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Cma15g01291 695 SUPERFAMILY DNA-binding pseudobarrel domain 120 258 IPR015300 -
Cma15g01291 695 Pfam Auxin response factor 255 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma15g01291 695 MobiDBLite consensus disorder prediction 400 414 - -
Cma15g01291 695 Pfam AUX/IAA family 571 620 IPR033389 -
Cma15g01291 695 Pfam AUX/IAA family 630 662 IPR033389 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00675 Cma-Chr4:3436434 Cma15g01291 Cma-Chr15:8184046 0 dispersed
Cma08g00114 Cma-Chr8:601684 Cma15g01291 Cma-Chr15:8184046 0 dispersed
Cma10g00017 Cma-Chr10:64046 Cma15g01291 Cma-Chr15:8184046 5.63E-32 dispersed
Cma15g01291 Cma-Chr15:8184046 Cma16g00533 Cma-Chr16:2722122 0 dispersed
Cma15g01291 Cma-Chr15:8184046 Cma02g00922 Cma-Chr2:5485375 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36481 PF02309 AUX_IAA 5.80E-07 CL0072 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01291 K14486 - csv:101209208 1242.25