Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01305 ATGAGGGATAATAAGAGAGAAGAACTGATGGATTTGATCTTCAGTGAGGAGGAATTTGAACGGTTCTACGATACTCGTGAGGAGATCTCCTCTGTGTCTGATTGGGGATCTGATTGCTCTGAGATTTGTAGTACAAGTTTTGGGGATGATAAGGATGTTCTTGAAAATTTAAGCTATGGGGGATGGATGAGAGACCTGGAAAGTGTTTATGAGCGCAGAAACAAGTTCTTCAAATGGATGGGTTTGGATTTGGATCAAAATTTTGATATCAGAGATGAAGAGGAAGGTGATTCGTGTCGATGGGTTCATCGGGACAGAATTCGGGAAGATCGTGGAACGGTGTTGAGACTTTCTGGTTCTGTTGGGGAGTTCTCTTCAAGTCTTACTATGTCTTCCATGTTAAACGAGGCTCCGGAATCATCAGGAAATGTTGCTGTGGAGGAGAATTGTACTATTAGGAATTTGGACAATGGGACTGAGTTTATTGTGGATAGTTTCAATGAGGATGGAGCGTTGAGCGTGTTACGGGAAGTTGGTTCGAACCGATCCTTTAGTTTTGATGAGTTCGAGAGAAACATTGGGCAGTCTCCCTTGGTTCGGAAACTCTTTCGGAAAAACGTTGAAAAGGCTGGACCTATAGTCAATGCCAGGAAAGAAGCGAAGAAGGGTTGGATGAGAAAATTGGGTACGGTTGCTTGTATAGTCGACAATGGGGAGGGCGCAACAAAGAGCAGTGTTTCCAATTCATCGTCTAAGACGGGGATACAACAAGTTCGTGTTCATCCATATAAAAAGAACTCCAAGGAATTATCATCCCTTTTTGTAGGACAAGAATTCGAAGCACATAAAGGGTCGATTTCTACAATGAAGTTCAGTTTTGATGGACGATACTTGGCTACTGCTGGTGAAGATGGCATTGTGCGTGTATGGCAAGTGAGTGAGGATGTGAAATTCGATAATTTCGACATTCACGATGTTGATCCTTCCTCTTTATACTTCTCAATGAATCACTCGTCCAAATTAGAACCCTTGGATGTGCCAAATGAGTCTGTAGGCAAGACGAAAGTGAAGAGATCATCAAGCACGGCGTGTGTAATTTTCCCACCAAAGCTATTTAGAATATTGGAGAAACCTCTGCACGAGTTCTCGGGACACAGTGGCAAGATCTTGGATCTATCTTGGTCGAAGAAAGGGCTTCTGCTATCATCTTCTGTCGATAAGACAGTACGTCTTTGGCAGCTGGGACGTGACACATGCCTAAGAGTTTACTGTCATAATAACTATGTAACATGTGTTAGTTTCAACCCTCAAGATGAAAATCACTTCATAAGTGGCTCGATTGATGGTAAAGTTCGGATCTGGGAAGTTCTTGCTTGTCAAGTGGTTGATTATATTGATATCCGTGAGATTGTAAGCGCTGTCTGTTACAGACCGGATGGAAAGGGAGGAATCGTGGGATCCATGACCGGGAACTGCCGTTTCTATAATATTATAGATAATCGATTGGAGCTCGATGCTCAAATATGCTTAAACGGGAAAAAGAAGTCGTCTGGGAACAGAATAATTGGCTTTGAGTTTTCGCCTAGCGACCCGAGCAAACTAATGGTTTGTTCTGTCGATTCACTGGTTCATATAATTTCTGAGGGCGATGTCATTTGCAAATTCAAGGGTCTTAGAAATGGTGGAAACAAGATGTCTGCTTCTTTTACATCTGATGGAAAGCATATTGTTTCAGCCAGTGAAGAAAATGTCTATGTTTGGAACTATAATTGTAAGGACAAAGCATCTCGGAAAAAGAAAATTTGGTCGTCCGAAAGTTTCTTCTCTCGTAGCGCGGCAATAGCCATACCTTGGTCTGGTGTGAAAATCACGCCCGAACCGCCATTGTCCCCAACACAAGTTTGCAACACAGCAGGAAGTATCCTCGAAATGGAGCCAAAGTATCCCGATGACAATGGTGATAGAGAACACAAGGTTCCATCATCTTCACCGGATTGCTTCTCTCTGAGTCGCACGCTATTTCCCGAGTTGCTCAAAGGAACTGCAACTTGGCCGGAGGAAAAACTCCATGATTCTAGCTCAATAACCACCCCTTTCCCTTCAATGTGCAAGACTGAGTTCAAGCTTTTGAAGAATGCTTGCCAGAGCATGCTTAGCTCTCCGCATATGTGGGGTCTCGTGATCGTAACCGCTGGATGGGACGGACGAATCAGAACATTTCTCAACTACGGTTTGCCTATTCGGTTATGA 2250 43.38 MRDNKREELMDLIFSEEEFERFYDTREEISSVSDWGSDCSEICSTSFGDDKDVLENLSYGGWMRDLESVYERRNKFFKWMGLDLDQNFDIRDEEEGDSCRWVHRDRIREDRGTVLRLSGSVGEFSSSLTMSSMLNEAPESSGNVAVEENCTIRNLDNGTEFIVDSFNEDGALSVLREVGSNRSFSFDEFERNIGQSPLVRKLFRKNVEKAGPIVNARKEAKKGWMRKLGTVACIVDNGEGATKSSVSNSSSKTGIQQVRVHPYKKNSKELSSLFVGQEFEAHKGSISTMKFSFDGRYLATAGEDGIVRVWQVSEDVKFDNFDIHDVDPSSLYFSMNHSSKLEPLDVPNESVGKTKVKRSSSTACVIFPPKLFRILEKPLHEFSGHSGKILDLSWSKKGLLLSSSVDKTVRLWQLGRDTCLRVYCHNNYVTCVSFNPQDENHFISGSIDGKVRIWEVLACQVVDYIDIREIVSAVCYRPDGKGGIVGSMTGNCRFYNIIDNRLELDAQICLNGKKKSSGNRIIGFEFSPSDPSKLMVCSVDSLVHIISEGDVICKFKGLRNGGNKMSASFTSDGKHIVSASEENVYVWNYNCKDKASRKKKIWSSESFFSRSAAIAIPWSGVKITPEPPLSPTQVCNTAGSILEMEPKYPDDNGDREHKVPSSSPDCFSLSRTLFPELLKGTATWPEEKLHDSSSITTPFPSMCKTEFKLLKNACQSMLSSPHMWGLVIVTAGWDGRIRTFLNYGLPIRL 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8225461 8230268 - CmaCh15G013050.1 Cma15g01305 310455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01305 749 Pfam WD domain, G-beta repeat 418 454 IPR001680 GO:0005515
Cma15g01305 749 Pfam WD domain, G-beta repeat 377 412 IPR001680 GO:0005515
Cma15g01305 749 Pfam WD domain, G-beta repeat 278 310 IPR001680 GO:0005515
Cma15g01305 749 Gene3D - 355 616 IPR015943 GO:0005515
Cma15g01305 749 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 382 414 - -
Cma15g01305 749 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 313 IPR001680 GO:0005515
Cma15g01305 749 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 422 456 - -
Cma15g01305 749 PRINTS G protein beta WD-40 repeat signature 298 312 IPR020472 -
Cma15g01305 749 PRINTS G protein beta WD-40 repeat signature 400 414 IPR020472 -
Cma15g01305 749 PRINTS G protein beta WD-40 repeat signature 442 456 IPR020472 -
Cma15g01305 749 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 15 749 - -
Cma15g01305 749 SUPERFAMILY WD40 repeat-like 276 739 IPR036322 GO:0005515
Cma15g01305 749 SMART WD40_4 548 588 IPR001680 GO:0005515
Cma15g01305 749 SMART WD40_4 457 496 IPR001680 GO:0005515
Cma15g01305 749 SMART WD40_4 416 455 IPR001680 GO:0005515
Cma15g01305 749 SMART WD40_4 511 547 IPR001680 GO:0005515
Cma15g01305 749 SMART WD40_4 272 311 IPR001680 GO:0005515
Cma15g01305 749 SMART WD40_4 375 413 IPR001680 GO:0005515
Cma15g01305 749 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 279 313 - -
Cma15g01305 749 ProSiteProfiles Trp-Asp (WD) repeats profile. 382 422 IPR001680 GO:0005515
Cma15g01305 749 Gene3D - 266 342 IPR015943 GO:0005515
Cma15g01305 749 ProSiteProfiles Trp-Asp (WD) repeats profile. 422 456 IPR001680 GO:0005515
Cma15g01305 749 PANTHER WD REPEAT DOMAIN 44 15 749 IPR040324 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01305 - - - cmax:111469017 1503.42
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00931 Cma15g01305 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01133 Cma-Chr2:6698172 Cma15g01305 Cma-Chr15:8225461 0 dispersed
Cma09g00880 Cma-Chr9:4318241 Cma15g01305 Cma-Chr15:8225461 5.90E-84 dispersed
Cma15g01017 Cma-Chr15:6290271 Cma15g01305 Cma-Chr15:8225461 0 dispersed
Cma15g01305 Cma-Chr15:8225461 Cma02g00931 Cma-Chr2:5536316 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g208 . . . . . . . . . . Cma02g00931 Cma15g01305 Car02g00680 Car15g01175 . . Cpe05g00780 . . . . . . . . . . . . . . . . . . . Csa05g00028 Chy09g01316 . . . Bda07g01942 . . . . . . Cmo02g00940 Cmo15g01372 . . . . . . Bhi12g00103 . . . . . Lcy12g1541 Cla01g00160 Cam01g0166 Cec01g0164 Cco01g0167 Clacu01g0162 Cmu01g0161 Cre09g2345 Lsi09g00152 . . Cme09g01865
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009425 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 4 3 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01305 Cma_Chr15 FPKM 13.246097 14.690493 9.576859 10.286942 7.127884 8.006878 7.812894 6.512974 6.172367 7.028796